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feat(derive-cutoff): report sketch shape and index viability Concordance (vs R DADA2) #407: Commit 9d446b9 pushed by cjfields
2m 47s feat/minimizer-screen
feat/minimizer-screen
2m 47s
fix(minimizer): allow k=5, and pin the w=1 equivalence as a test Concordance (vs R DADA2) #406: Commit 2336579 pushed by cjfields
3m 24s feat/minimizer-screen
feat/minimizer-screen
3m 24s
feat(derive-cutoff): pair-level agreement with the k-mer screen Concordance (vs R DADA2) #405: Commit 70a35bf pushed by cjfields
2m 34s feat/minimizer-screen
feat/minimizer-screen
2m 34s
fix(derive-cutoff): sample the pairs b_compare screens, not uniform p… Concordance (vs R DADA2) #404: Commit 0d05141 pushed by cjfields
3m 11s feat/minimizer-screen
feat/minimizer-screen
3m 11s
dev(sweep): derep the Illumina arms so --derive-cutoff can be checked… Concordance (vs R DADA2) #403: Commit b139acd pushed by cjfields
3m 41s feat/minimizer-screen
feat/minimizer-screen
3m 41s
fix(kdist-calibrate): test helper missing derive_cutoff; hook now bui… Concordance (vs R DADA2) #402: Commit a9a8f02 pushed by cjfields
3m 6s feat/minimizer-screen
feat/minimizer-screen
3m 6s
dev(sweep): add a GRAINS axis for the last unexploited headroom Concordance (vs R DADA2) #401: Commit c368980 pushed by cjfields
3m 14s feat/minimizer-screen
feat/minimizer-screen
3m 14s
docs(findings): the auto arm is a second control channel; retire the … Concordance (vs R DADA2) #400: Commit 1fd68e7 pushed by cjfields
2m 44s feat/minimizer-screen
feat/minimizer-screen
2m 44s
docs(findings): the index selection rule, validated on pooled PacBio Concordance (vs R DADA2) #399: Commit cb05c89 pushed by cjfields
2m 42s feat/minimizer-screen
feat/minimizer-screen
2m 42s
fix(minimizer): warn on an unrecognised DADA2RS_MINIMIZER_INDEX value Concordance (vs R DADA2) #398: Commit cbe0d8e pushed by cjfields
2m 44s feat/minimizer-screen
feat/minimizer-screen
2m 44s
dev(sweep): add _auto arms, and force the _c arms on explicitly Concordance (vs R DADA2) #397: Commit a05b0b0 pushed by cjfields
3m 15s feat/minimizer-screen
feat/minimizer-screen
3m 15s
feat(minimizer): choose the inverted index per workload instead of al… Concordance (vs R DADA2) #396: Commit 57bc966 pushed by cjfields
3m 2s feat/minimizer-screen
feat/minimizer-screen
3m 2s
docs(findings): pooled PacBio confirms the serial scatter, falsifies … Concordance (vs R DADA2) #395: Commit 8343715 pushed by cjfields
2m 31s feat/minimizer-screen
feat/minimizer-screen
2m 31s
docs(findings): pooled PacBio reverses the index result -- reopen it Concordance (vs R DADA2) #394: Commit ecea4c7 pushed by cjfields
3m 18s feat/minimizer-screen
feat/minimizer-screen
3m 18s
dev(sweep): add a w axis, to test why the platforms differ Concordance (vs R DADA2) #393: Commit 34e9d10 pushed by cjfields
3m 7s feat/minimizer-screen
feat/minimizer-screen
3m 7s
fix(cli): --minimizer-k help advertised the old default of 11 Concordance (vs R DADA2) #392: Commit cfd6a56 pushed by cjfields
3m 0s feat/minimizer-screen
feat/minimizer-screen
3m 0s
docs(findings): the index question is closed on both platforms Concordance (vs R DADA2) #391: Commit 4786371 pushed by cjfields
3m 20s feat/minimizer-screen
feat/minimizer-screen
3m 20s
docs(findings): add the index-on/off trend that 4deff83's message cla… Concordance (vs R DADA2) #390: Commit 8e38585 pushed by cjfields
3m 51s feat/minimizer-screen
feat/minimizer-screen
3m 51s
docs(findings): PacBio 0.45 is 18.7% faster for bit-identical output Concordance (vs R DADA2) #389: Commit 4deff83 pushed by cjfields
1m 10s feat/minimizer-screen
feat/minimizer-screen
1m 10s
dev(sweep): fix unbound DADA_CMD in the config guard Concordance (vs R DADA2) #388: Commit a97c43a pushed by cjfields
4m 1s feat/minimizer-screen
feat/minimizer-screen
4m 1s
dev(sweep): refuse to reuse an out-dir built with a different configu… Concordance (vs R DADA2) #387: Commit acb26cf pushed by cjfields
2m 34s feat/minimizer-screen
feat/minimizer-screen
2m 34s
docs(findings): PacBio is exactly concordant, and the index earns its… Concordance (vs R DADA2) #386: Commit de4351e pushed by cjfields
3m 20s feat/minimizer-screen
feat/minimizer-screen
3m 20s
dev(sweep): port the index-off timing arm to the Illumina script Concordance (vs R DADA2) #385: Commit d0772d3 pushed by cjfields
3m 9s feat/minimizer-screen
feat/minimizer-screen
3m 9s
dev(compare-asvs): --per-sample mode with within-sample flip pairing Concordance (vs R DADA2) #384: Commit 7097c1e pushed by cjfields
3m 18s feat/minimizer-screen
feat/minimizer-screen
3m 18s
dev(pacbio sweep): index-off as a first-class arm, with an exactness … Concordance (vs R DADA2) #383: Commit 28696fc pushed by cjfields
2m 56s feat/minimizer-screen
feat/minimizer-screen
2m 56s