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dev: derive a screen's cutoff from its calibration curve
Concordance (vs R DADA2)
#332:
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84ede3a
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3m 14s
feat/minimizer-screen
feat/minimizer-screen
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dev: (k, cutoff) sweep for the minimizer screen, on accuracy AND work…
Concordance (vs R DADA2)
#331:
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df73838
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3m 7s
feat/minimizer-screen
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dev: nbases convergence ladder that separates depth from sample compo…
Concordance (vs R DADA2)
#330:
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e2e5339
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3m 36s
feat/minimizer-screen
feat/minimizer-screen
3m 36s
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Merge pull request #160 from HPCBio/feat/gate-timing-warning
Docker
#430:
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Merge pull request #160 from HPCBio/feat/gate-timing-warning
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#428:
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Merge pull request #159 from HPCBio/perf/pupdate-layout-154
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#427:
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Merge pull request #159 from HPCBio/perf/pupdate-layout-154
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feat(gates): warn when a gate invalidates the run's timings
Docker
#428:
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#160
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2m 54s
feat/gate-timing-warning
feat/gate-timing-warning
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feat(gates): warn when a gate invalidates the run's timings
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#426:
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2m 21s
feat/gate-timing-warning
feat/gate-timing-warning
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feat(gates): warn when a gate invalidates the run's timings
Concordance (vs R DADA2)
#329:
Pull request
#160
opened by
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3m 22s
feat/gate-timing-warning
feat/gate-timing-warning
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feat(gates): warn when a gate invalidates the run's timings
Concordance (vs R DADA2)
#328:
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2m 46s
feat/gate-timing-warning
feat/gate-timing-warning
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perf(pval): prefetch the next Raw in b_p_update's hot loop (#154)
CI
#425:
Pull request
#159
opened by
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3m 9s
perf/pupdate-layout-154
perf/pupdate-layout-154
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perf(pval): prefetch the next Raw in b_p_update's hot loop (#154)
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#427:
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2m 31s
perf/pupdate-layout-154
perf/pupdate-layout-154
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perf(pval): prefetch the next Raw in b_p_update's hot loop (#154)
Concordance (vs R DADA2)
#327:
Pull request
#159
opened by
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3m 26s
perf/pupdate-layout-154
perf/pupdate-layout-154
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View #159
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docs: record the b_p_update prefetch result (#154)
Concordance (vs R DADA2)
#326:
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2m 58s
perf/pupdate-layout-154
perf/pupdate-layout-154
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perf(pval): prefetch the next Raw in b_p_update's hot loop (#154)
Concordance (vs R DADA2)
#325:
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3m 5s
perf/pupdate-layout-154
perf/pupdate-layout-154
3m 5s
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bench(pval): add a software-prefetch arm (#154)
Concordance (vs R DADA2)
#324:
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2m 59s
perf/pupdate-layout-154
perf/pupdate-layout-154
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bench(pval): resample members per round; the arms now rank differently
Concordance (vs R DADA2)
#323:
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2m 58s
perf/pupdate-layout-154
perf/pupdate-layout-154
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bench(pval): the access pattern was prefetchable; randomise it, add a…
Concordance (vs R DADA2)
#322:
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2m 59s
perf/pupdate-layout-154
perf/pupdate-layout-154
2m 59s
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Merge pull request #158 from HPCBio/perf/pupdate-attribution-154
CI
#424:
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2m 2s
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2m 2s
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Merge pull request #158 from HPCBio/perf/pupdate-attribution-154
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#426:
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2m 24s
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2m 24s
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bench(pval): price the layout candidates before building one (#154)
Concordance (vs R DADA2)
#321:
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3m 31s
perf/pupdate-layout-154
perf/pupdate-layout-154
3m 31s
View workflow file
feat(pval): attribute b_p_update's cost by path (#154)
Docker
#425:
Pull request
#158
opened by
cjfields
2m 18s
perf/pupdate-attribution-154
perf/pupdate-attribution-154
2m 18s
View #158
View workflow file
feat(pval): attribute b_p_update's cost by path (#154)
Concordance (vs R DADA2)
#320:
Pull request
#158
opened by
cjfields
3m 35s
perf/pupdate-attribution-154
perf/pupdate-attribution-154
3m 35s
View #158
View workflow file
feat(pval): attribute b_p_update's cost by path (#154)
CI
#423:
Pull request
#158
opened by
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2m 48s
perf/pupdate-attribution-154
perf/pupdate-attribution-154
2m 48s
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