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Merge pull request #160 from HPCBio/feat/gate-timing-warning
Docker
#430:
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Merge pull request #159 from HPCBio/perf/pupdate-layout-154
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feat(gates): warn when a gate invalidates the run's timings
Docker
#428:
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#160
opened by
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2m 54s
feat/gate-timing-warning
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perf(pval): prefetch the next Raw in b_p_update's hot loop (#154)
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#427:
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#159
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perf/pupdate-layout-154
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Merge pull request #158 from HPCBio/perf/pupdate-attribution-154
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feat(pval): attribute b_p_update's cost by path (#154)
Docker
#425:
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#158
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perf/pupdate-attribution-154
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Merge pull request #156 from HPCBio/dev/thread-sweep-analysis
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Thread sweep: tooling, symmetric --numa, tuning guide, and findings (#152)
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Thread sweep: tooling, symmetric --numa, tuning guide, and findings (#152)
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Merge pull request #153 from HPCBio/feat/gate-reporting-145
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feat(gates): report resolved tuning gates, warn on unrecognised ones (#145)
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chore: ignore mkdocs build output
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Fix indexing and links
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Add in stub walkthrough pages for binned reads (separate, but may com…
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docs(findings): link the run-non-uniformity section to #152
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Merge pull request #150 from HPCBio/feat/progress-lines
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Merge pull request #149 from HPCBio/docs/store-scan-followup
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docs(findings): record the #147 levers that did not pay, and the benchmark that showed it
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#413:
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feat(dada): emit periodic phase deltas under --verbose
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#412:
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feat(dada): emit periodic phase deltas under --verbose
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#411:
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docs(findings): record the #147 levers that did not pay, and the benchmark that showed it
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#410:
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Merge pull request #148 from HPCBio/perf/store-scan-147-emin
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perf(compare): hoist e_minmax into a dense array — store −71%, run_dada −20% (#147)
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#408:
Pull request
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perf/store-scan-147-emin
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Merge pull request #146 from HPCBio/perf/compare-attribution-143
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perf(compare): attribute b_compare's serial remainder, then fold it away (#143)
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#406:
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opened by
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2m 15s
perf/compare-attribution-143
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