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chore: API schema and test updates - #304

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seanthimons wants to merge 36 commits into
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automated/schema-update
Closed

chore: API schema and test updates#304
seanthimons wants to merge 36 commits into
integrationfrom
automated/schema-update

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@seanthimons

@seanthimons seanthimons commented Aug 31, 2026 •
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Automated Schema Update

This PR was automatically generated by the schema check workflow.

Changed Files

  • schema/coverage_baseline.json
  • schema/ctx_bioactivity_prod.json
  • schema/ctx_chemical_prod.json
  • schema/ctx_exposure_prod.json
  • schema/epi-suite-prod.json

No endpoint-level changes detected.

Function Stub Generation

  • Stubs Generated: 213
  • New Files Created: 0
  • Existing Files Updated: 0
  • Skipped (empty schema): 0
  • Protected (lifecycle guard): 0

Test Gaps & Generation

  • Gaps Detected: 12
  • Tests Generated: 0
  • Tests Skipped (Protected): 0
  • Tests Removed: 0
  • Generated Test Check: pass
  • Gaps Remaining: 0

API Coverage

API Coverage Endpoints Functions
CompTox Dashboard (ct_*) 100.0% 140 140
Cheminformatics (chemi_*) 99.5% 191 190
EPI Suite (epi_*) 100.0% 12 12

Review Checklist

  • Review schema changes for breaking API modifications
  • Review generated function stubs for correctness
  • Check if any existing package functions need updates
  • Run tests to verify compatibility

Generated by GitHub Actions

@seanthimons
seanthimons force-pushed the automated/schema-update branch 3 times, most recently from 50425fd to b2b5b6c Compare September 7, 2026 09:21
@seanthimons
docs: plan extraction of ECOTOX lifestage harmonization
2745f6b
@seanthimons
docs: assess schema tooling extraction and generalization
b983f41
@seanthimons
docs: add handoff for package migrations
722e2a8
@seanthimons
docs: reconcile migration plans and delegation gates
516dfd4
@seanthimons
build: prepare source-only database publication gates
aeb1a89
@seanthimons
test: record frozen endpoint baseline results
ab04f0a
@seanthimons
build: isolate source-only database publication workflow
0bd2eca
@seanthimons
feat(ecotox)!: return native life-stage data without automatic deriva…
a03879c 
…tion
@seanthimons
fix(ecotox): preserve native text types in empty and missing HTTP res…
cceb4b7 
…ults
@seanthimons
feat(ecotox)!: complete verified lifestage transfer and source-only d…
9467f8c 
…elivery
@seanthimons
ci: exempt verified migration checksum false positives
3f5caad
@seanthimons
build: declare localhost test dependencies and repair release checks
806c528
@seanthimons
refactor: use installed schema tooling with verified client parity
7eeea37
@seanthimons
docs: record final toolkit check counts and adapter size
a116dee
@seanthimons
feat(endpoints)!: use production operations and explicit service sett…
0104cc6 
…ings
@seanthimons
feat: generate isolated local clients from explicit schema inputs
67caa04
@seanthimons
feat: install generated clients in isolated local libraries
a1b5536
@seanthimons
feat(endpoints)!: isolate local schemas and enforce public package bo…
ab755fd 
…undaries
@seanthimons
docs(endpoints): record removed exports and preserved input hashes
31af64e
@seanthimons
test(ecotox): cover native inspection and filtered local API queries
2b92e0a
@seanthimons
test(ecotox): compare resolved database paths across platforms
1034450
@seanthimons
fix(tooling): preserve formatter settings during isolated generation
229f2ab
@seanthimons
ci: use source dependencies for macOS development R
087a88c
@seanthimons
ci: run Windows database tests sequentially
75dd83e
@seanthimons
ci: resolve Windows test settings from the job matrix
027ee6a
@seanthimons
seanthimons force-pushed the automated/schema-update branch 4 times, most recently from eb0843f to e7e1a75 Compare September 16, 2026 09:15
@seanthimons
seanthimons force-pushed the automated/schema-update branch 3 times, most recently from 518824d to 1097a14 Compare September 23, 2026 09:16
@seanthimons
seanthimons force-pushed the automated/schema-update branch 4 times, most recently from 1b863e1 to 02768e2 Compare October 2, 2026 09:16
@seanthimons
seanthimons force-pushed the automated/schema-update branch 3 times, most recently from 0698e11 to d674687 Compare October 9, 2026 09:19
@seanthimons
seanthimons force-pushed the automated/schema-update branch from d674687 to 61bc4be Compare October 12, 2026 09:29
@seanthimons
seanthimons force-pushed the automated/schema-update branch from 61bc4be to 3a13136 Compare October 14, 2026 09:15
@seanthimons

seanthimons commented Oct 15, 2026

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Closing: integration was reset to main (its prior commits were already on main via squash merges #306–#308). The schema bot will regenerate this against the current base.

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