Issues

• DSSTox: decide synonym source now that the export has no IDENTIFIER column

  area:data-pipelinespriority:highquestion
  seanthimons/ComptoxR#349 · Filter by author seanthimons opened on Oct 5, 2026

• ct_chemical_search_equal_bulk returns one of several tied hits, chosen by batch composition

  seanthimons/ComptoxR#348 · Filter by author seanthimons opened on Oct 5, 2026
  1

• ci: migrate workflows to seanthimons/baseline callers

  seanthimons/ComptoxR#324 · Filter by author seanthimons opened on Sep 24, 2026

• ci: adopt baseline hygiene (pinning, permissions, timeouts, concurrency, dependabot)

  seanthimons/ComptoxR#323 · Filter by author seanthimons opened on Sep 24, 2026

• ci: restrict token permissions on PR runs (pkgdown, default write token)

  seanthimons/ComptoxR#322 · Filter by author seanthimons opened on Sep 24, 2026

• ci: fix commit-lint scope regex and lint PRs to integration

  seanthimons/ComptoxR#321 · Filter by author seanthimons opened on Sep 24, 2026

• ci: stop paths-ignore from skipping DESCRIPTION, NAMESPACE, and .github changes

  seanthimons/ComptoxR#320 · Filter by author seanthimons opened on Sep 24, 2026

• ci: stop exposing CTX_API_KEY to routine test jobs

  seanthimons/ComptoxR#319 · Filter by author seanthimons opened on Sep 24, 2026

• ci: delete broken force-push automation rebase-WIP-branches.yml

  seanthimons/ComptoxR#318 · Filter by author seanthimons opened on Sep 24, 2026

• ci: delete dead issue step (unpinned @main action) and no-op Codecov upload in pipeline-tests.yml

  seanthimons/ComptoxR#317 · Filter by author seanthimons opened on Sep 24, 2026

• ci: remove live cassette re-record path from pipeline-tests.yml

  seanthimons/ComptoxR#316 · Filter by author seanthimons opened on Sep 24, 2026

• ci: remove script injection in record-cassettes.yml

  seanthimons/ComptoxR#315 · Filter by author seanthimons opened on Sep 24, 2026

• fix(resolver): define omitted sort behavior for similarity map

  seanthimons/ComptoxR#267 · Filter by author seanthimons opened on Jul 27, 2026

• Automate live descriptor compatibility probes

  area:chemi-descriptorsautomatedcomplexity:mediumimpact:mediumpriority:lowtask
  seanthimons/ComptoxR#265 · Filter by author seanthimons opened on Jul 23, 2026 · Now: Descriptor and API Reliability

• Repair and normalize WebTEST prediction wrappers

  area:chemi-descriptorsbugcomplexity:mediumimpact:mediumpriority:medium
  seanthimons/ComptoxR#264 · Filter by author seanthimons opened on Jul 23, 2026 · Now: Descriptor and API Reliability

• Return validated descriptor tibbles with provenance

  area:chemi-descriptorsbugcomplexity:highimpact:highpriority:high
  seanthimons/ComptoxR#263 · Filter by author seanthimons opened on Jul 23, 2026 · Now: Descriptor and API Reliability

• Repair descriptor bulk routing and request payloads

  area:chemi-descriptorsbugcomplexity:highimpact:highpriority:high
  seanthimons/ComptoxR#262 · Filter by author seanthimons opened on Jul 23, 2026 · Now: Descriptor and API Reliability

• [Epic] Functional molecular descriptor and WebTEST wrappers

  architecturearea:chemi-descriptorscomplexity:highenhancementimpact:highpriority:high
  seanthimons/ComptoxR#261 · Filter by author seanthimons opened on Jul 23, 2026 · Now: Descriptor and API Reliability
  1

• CI: lifestage patch-seed tests fail in full-network suites (Test Coverage / Integration Tests)

  bug
  seanthimons/ComptoxR#259 · Filter by author seanthimons opened on Jul 13, 2026

• CRAN Readiness CI hangs under TESTTHAT_PARALLEL=TRUE (callr 'zero-length variable name')

  area:unit-testsbugcomplexity:mediumimpact:lowpriority:low
  seanthimons/ComptoxR#253 · Filter by author seanthimons opened on Jul 9, 2026
  1

• Set up R-Universe submission (post-CRAN-readiness)

  complexity:mediumenhancementimpact:mediumpriority:low
  seanthimons/ComptoxR#246 · Filter by author seanthimons opened on Jun 30, 2026

• Re-implement bioactivity assay annotation (annotate=TRUE) post-CRAN

  complexity:mediumenhancementimpact:lowpriority:low
  seanthimons/ComptoxR#239 · Filter by author seanthimons opened on Jun 28, 2026

• Add package sitrep and run helper tests

  area:cran-releasearea:unit-testscomplexity:lowgate:unit-test-readinessimpact:highpriority:mediumtask
  seanthimons/ComptoxR#232 · Filter by author seanthimons opened on Jun 26, 2026 · Now: CRAN Release Readiness

• Expand generic request mocked edge-case tests

  area:cran-releasearea:unit-testscomplexity:mediumgate:unit-test-readinessimpact:highpriority:mediumtask
  seanthimons/ComptoxR#231 · Filter by author seanthimons opened on Jun 26, 2026 · Now: CRAN Release Readiness

• Add local database skip and fixture policy

  area:cran-releasearea:unit-testscomplexity:lowdocumentationgate:unit-test-readinessimpact:highpriority:mediumtask
  seanthimons/ComptoxR#227 · Filter by author seanthimons opened on Jun 26, 2026 · Now: CRAN Release Readiness