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quast 5.3.0 #2270

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d815b4a
quast 5.3.0
BenjaminDEMAILLE Jul 7, 2026
075a96b
quast: fix CI (align python to 3.14 for matplotlib ABI)
BenjaminDEMAILLE Jul 8, 2026
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10 changes: 5 additions & 5 deletions Formula/quast.rb
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
class Quast < Formula
# cite Gurevich_2013: "https://doi.org/10.1093/bioinformatics/btt086"
# cite Mikheenko_2015: "https://doi.org/10.1093/bioinformatics/btv697"
Expand All @@ -7,8 +7,8 @@

desc "Quality Assessment Tool for Genome Assemblies"
homepage "https://quast.sourceforge.io/"
url "https://github.com/ablab/quast/archive/refs/tags/quast_5.2.0.tar.gz"
sha256 "db903a6e4dd81384687f1c38d47cbe0f51bdf7f6d5e5c0bd30c13796391f4f04"
url "https://github.com/ablab/quast/archive/refs/tags/quast_5.3.0.tar.gz"
sha256 "b9caa839d9f072dc257b3b1f28288b3ec36bd061bc92fa7079b517ffbd0c2de3"
head "https://github.com/ablab/quast.git", branch: "master"

bottle do
Expand All @@ -25,7 +25,7 @@
depends_on "minimap2"
depends_on "openjdk@11"
depends_on "python-matplotlib"
depends_on "python@3.12"
depends_on "python@3.14"
depends_on "sambamba"

uses_from_macos "perl"
Expand All @@ -47,7 +47,7 @@
end

def python3
which("python3.12")
which("python3.14")
end

def install
Expand All @@ -61,7 +61,7 @@
"return get_path_to_program(fname, sambamba_dirpath)"
s.gsub! "from distutils.dir_util import copy_tree", "from setuptools import copy_tree"
end
# To be compatible with python 3.12
# To be compatible with python 3.12+ (distutils removed)
inreplace "quast_libs/qconfig.py", "from distutils.version import LooseVersion",
"from packaging.version import Version as LooseVersion"
# Use Homebrew's barrnap
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