MannLabs · lucas-diedrich · Aug 26, 2025 · Aug 11, 2025
diff --git a/docs/api.rst b/docs/api.rst
@@ -36,6 +36,7 @@ Reader
    :maxdepth: 2
 
    modules_psm_reader
+   modules_pg_reader
 
 
 I/O

diff --git a/docs/modules_pg_reader.rst b/docs/modules_pg_reader.rst
@@ -0,0 +1,17 @@
+alphabase.pg_reader
+===========================
+
+All pg_readers can be accessed by
+:obj:`pg_reader_provider <alphabase.pg_reader.pg_reader.pg_reader_provider>`.
+
+.. toctree::
+   :maxdepth: 1
+
+   pg_reader/pg_base
+   pg_reader/alphadia_pg_reader
+   pg_reader/alphapept_pg_reader
+   pg_reader/diann_pg_reader
+   pg_reader/fragpipe_pg_reader
+   pg_reader/maxquant_pg_reader
+   pg_reader/mztab_pg_reader
+   pg_reader/spectronaut_pg_reader
diff --git a/docs/pg_reader/alphadia_pg_reader.rst b/docs/pg_reader/alphadia_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.alphadia_pg_reader
+======================================
+
+.. automodule:: alphabase.pg_reader.alphadia_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/alphapept_pg_reader.rst b/docs/pg_reader/alphapept_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.alphapept_pg_reader
+=======================================
+
+.. automodule:: alphabase.pg_reader.alphapept_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/diann_pg_reader.rst b/docs/pg_reader/diann_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.diann_pg_reader
+===================================
+
+.. automodule:: alphabase.pg_reader.diann_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/fragpipe_pg_reader.rst b/docs/pg_reader/fragpipe_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.fragpipe_pg_reader
+======================================
+
+.. automodule:: alphabase.pg_reader.fragpipe_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/maxquant_pg_reader.rst b/docs/pg_reader/maxquant_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.maxquant_pg_reader
+======================================
+
+.. automodule:: alphabase.pg_reader.maxquant_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/mztab_pg_reader.rst b/docs/pg_reader/mztab_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.mztab_pg_reader
+======================================
+
+.. automodule:: alphabase.pg_reader.mztab_pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/pg_base.rst b/docs/pg_reader/pg_base.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.base
+========================
+
+.. automodule:: alphabase.pg_reader.pg_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/pg_reader/spectronaut_pg_reader.rst b/docs/pg_reader/spectronaut_pg_reader.rst
@@ -0,0 +1,7 @@
+alphabase.pg_reader.spectronaut_reader
+======================================
+
+.. automodule:: alphabase.pg_reader.spectronaut_reader
+   :members:
+   :undoc-members:
+   :show-inheritance:
-Original file line number
+Diff line change
@@ Expand Up / @@ -36,6 +36,7 @@ Reader @@
        :maxdepth: 2
        modules_psm_reader
+       modules_pg_reader
     I/O
@@ Expand Down @@