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Pull requests: MannLabs/alphabase

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Pull requests list

[translate 3/3] Fix correctness and naming in the spectral library exports
#446 opened Sep 2, 2026 by mo-sameh Collaborator • 3/3 • Draft
[translate 2/3] Split the shared export machinery out of translate.py
#445 opened Sep 2, 2026 by mo-sameh Collaborator • 2/3 • Draft
[translate 1/3] Characterize the spectral library exports
#444 opened Sep 2, 2026 by mo-sameh Collaborator • 1/3 Loading…
1
fix xxhash 4 string hashing, skip numpy-2-incompatible pytables tests
#443 opened Sep 1, 2026 by mschwoer Contributor Loading…
2
[5/5] Perf: index the fragment rows instead of the dense slots
#438 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
6
[4/5] Perf: build the flat fragment columns from the kept indices
#437 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
6
[3/5] Refactor: extract the charged fragment type annotation and the pointer reannotation
#436 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
1
[2/5] Refactor: make the fragment parsing helpers private
#435 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
3
[1/5] Tests: characterize flatten_fragments before the memory refactor
#434 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
5
Share the modification registry with multiprocessing workers
#428 opened Aug 31, 2026 by GeorgWa Collaborator Loading…
5
Peaks reader enhancement New feature or request
#397 opened Jan 19, 2026 by vbrennsteiner Contributor Loading…
@vbrennsteiner
18
Fix spectronaut reader mapping
#396 opened Jan 14, 2026 by vbrennsteiner Contributor Loading…
@vbrennsteiner
6
modify/provide specific error log for resolve error
#350 opened Sep 26, 2025 by elephantoid Loading…
1
add defaults to psm_reader.yaml
#349 opened Sep 25, 2025 by vbrennsteiner Contributor Loading…
@vbrennsteiner
2
new: adding diann phospho mods
#344 opened Sep 16, 2025 by boopthesnoot Contributor Loading…
2
Fix issue with zero fragment intensity predictions
#329 opened Aug 6, 2025 by jcharkow Loading…
1
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