Spectronaut PG Reader - #331

Merged

lucas-diedrich merged 35 commits into

pg-reader-5-maxquantfrom

pg-reader-6-spectronaut

Aug 26, 2025

Commits on Aug 23, 2025

[Fix] Fix typo
lucas-diedrich
committed
9f4d3e7
[Doc] Update docstring, add more explicit parameter explanations
lucas-diedrich
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521fa13
[Doc] Update docstrings and remove incorrect copy documentation
lucas-diedrich
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3fd9d98
[Doc] Clarify docstring
lucas-diedrich
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7717cd2
[Feature] Spectronaut reader
lucas-diedrich
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31e46e3
[Feature] Spectronaut reader config
lucas-diedrich
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5aaf207
[API] Expose spectronaut reader to users
lucas-diedrich
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3cfc4ca
[Test] Spectronaut integration tests
lucas-diedrich
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f28d73e
[Doc] Add examples
lucas-diedrich
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4573149
[Fix] Rename pre-configured regex to default
lucas-diedrich
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c287cd2
[Fix] Fix typos
lucas-diedrich
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4940a73
[Feature] Add parquet support. Specifically desirable for spectronaut reports which are also exported in parquet format
lucas-diedrich
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b5c7a9b
[Test] Add integration test for spectronaut.parquet report
lucas-diedrich
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41eef70
[Doc] Add regular expression documentation
lucas-diedrich
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207e386
[Doc] Improve docstring of class initialization
lucas-diedrich
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ef71f1a
[Feature] Add additional column mapping for parquet report protein groups
lucas-diedrich
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a2427d7
[Test] Refactor tests so that they work with local data
lucas-diedrich
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0e13e68
[Test-Data] Add test data reference for spectronaut reports
lucas-diedrich
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5e9c1c0
[Feature] Implement fragpipe reader
lucas-diedrich
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85e05cb
[API] Expose FragPipeReader to users
lucas-diedrich
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4a46205
[Tests] Add integration test for FragPipeReader
lucas-diedrich
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808547b
[Fix] Fix typo in URL
lucas-diedrich
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38b995d
[Test] Update tests to work with local data (FragPipe PG reader)
lucas-diedrich
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deccde6
[Test-data] Add test reference data (PG fragpipe)
lucas-diedrich
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6cbe7d9
[Feature] Add MZTab protein group reader
lucas-diedrich
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cc9b861
[API] Expose MZTab to users
lucas-diedrich
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6699fac
[Tests] Add integration tests
lucas-diedrich
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8e0e8c5
[Refactor] Set correct default values
lucas-diedrich
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2a2848e
[Tests] Add integration tests
lucas-diedrich
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00c72f0
[Test] Refactor mztab integration test so that it runs with local data
lucas-diedrich
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86eeb7a
[Test-data] Add local test data (mzTAB PG Reader)
lucas-diedrich
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15545aa
[Doc] Add PG-reader API docs
lucas-diedrich
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0343aeb

Commits on Aug 26, 2025