Issues

• Dealing with technical replicates

  zhangyuqing/ComBat-seq#49 · Filter by author GACGAMA opened on Mar 26, 2026

• Filtering for lowly expressed genes

  zhangyuqing/ComBat-seq#48 · Filter by author jfreeland01 opened on Jan 12, 2026

• Correcting donor effects using Combat-seq

  zhangyuqing/ComBat-seq#47 · Filter by author annepureddy opened on Oct 27, 2025

• running Combat-seq with SVA resaults

  zhangyuqing/ComBat-seq#46 · Filter by author pezhmansafdari opened on Jun 17, 2025

• ComBat_seq returns a list rather a matrix if rm=0

  zhangyuqing/ComBat-seq#44 · Filter by author flowerdna opened on Dec 19, 2024

• Can i nordmalise without having commvon sample between two repeats

  zhangyuqing/ComBat-seq#43 · Filter by author ucbtsh6 opened on Mar 25, 2024

• The covariates are confounded

  zhangyuqing/ComBat-seq#42 · Filter by author SimonSchlumbohm opened on Mar 25, 2024
  3

• Batch effect present for some biotypes after running CombatSeq

  zhangyuqing/ComBat-seq#41 · Filter by author kvn95ss opened on Jan 26, 2024

• no data rows with required number of counts

  zhangyuqing/ComBat-seq#40 · Filter by author Chenjlin28 opened on Nov 30, 2023

• A strange problem

  zhangyuqing/ComBat-seq#39 · Filter by author zonzero opened on Aug 25, 2023
  1

• Plus one (well, I mean more than one) samples

  zhangyuqing/ComBat-seq#38 · Filter by author woodyNsinbad opened on Aug 16, 2023

• ComBat-seq doesn't support 1 sample per batch yet

  zhangyuqing/ComBat-seq#37 · Filter by author jianwu1 opened on May 27, 2023

• Combat-seq, Pseudoaligners and DESeq2

  zhangyuqing/ComBat-seq#36 · Filter by author pintoa1-mskcc opened on Apr 11, 2023

• running combat-seq with DESeq2

  zhangyuqing/ComBat-seq#35 · Filter by author Mercilena opened on Mar 11, 2023
  1

• How to adjust by multiple variables using ComBat-Seq?

  zhangyuqing/ComBat-seq#33 · Filter by author emesquinas opened on Jul 26, 2022
  3

• Error in order(y) : unimplemented type 'list' in 'orderVector1'

  zhangyuqing/ComBat-seq#32 · Filter by author dea-jenaer opened on Jul 1, 2022

• Common not tagwise dispersion used when one level of covariate - Code error?

  zhangyuqing/ComBat-seq#31 · Filter by author reidbm opened on Jun 1, 2022

• Keep getting the error that rows do not match

  zhangyuqing/ComBat-seq#30 · Filter by author sameet-sema4 opened on Dec 21, 2021
  1

• ComBat_seq took a very long time

  zhangyuqing/ComBat-seq#29 · Filter by author rongwong1119 opened on Dec 1, 2021
  12

• Can I Use ComBat-Seq to adjust multigroups RNAseq?

  zhangyuqing/ComBat-seq#28 · Filter by author yirenheihei opened on Aug 11, 2021

• Using ComBat-Seq to adjust for batch effect/ colony ID

  zhangyuqing/ComBat-seq#27 · Filter by author mastoldt opened on Jul 6, 2021

• Multiple corrections

  zhangyuqing/ComBat-seq#26 · Filter by author tea-radut opened on Jun 15, 2021

• Error in qr.default(design) : NA/NaN/Inf in foreign function call (arg 1)

  zhangyuqing/ComBat-seq#25 · Filter by author chiwwong opened on Jun 7, 2021
  3

• Run combat-seq on continues variable

  zhangyuqing/ComBat-seq#24 · Filter by author jeppeseverens opened on Jun 1, 2021

• Using ComBat-Seq over RSEM estimated counts

  zhangyuqing/ComBat-seq#23 · Filter by author ali-kishk opened on Apr 27, 2021
  1