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Fix aggregate_duplicates GRanges CI failure on Bioconductor devel - #348

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stemangiola merged 1 commit into
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fix/granges-as-tibble-ci
Sep 5, 2026
Merged

stemangiola merged 1 commit into
masterfrom
fix/granges-as-tibble-ci

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Summary

  • Ubuntu rworkflows failed on master because aggregate_duplicates() called as_tibble() directly on GRanges row ranges; with S4Vectors 0.51.9 on Bioconductor devel that dispatches through List methods and errors (GRanges does not support [[).
  • Convert ranges with as.data.frame() before as_tibble(), matching the GenomicRanges conversion path.
  • Bump version to 2.3.3 and document in NEWS.

Test plan

  • Locally re-ran tests/testthat/test-tximeta_GRnges_IRanges.R (no error)
  • Confirm ubuntu-latest rworkflows passes on this PR
  • Confirm macOS/Windows remain green

Made with Cursor

as_tibble() on GRanges now hits broken S4Vectors List dispatch; convert via as.data.frame() first so ubuntu CI passes.

Co-authored-by: Cursor <cursoragent@cursor.com>
@stemangiola
stemangiola merged commit 7f34e9d into master Sep 5, 2026
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