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tidyomics
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Dispersion estimation
- #347
#347
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stemangiola
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tidyomics/tidybulk:master
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dispersion_estimation
tidyomics/tidybulk:dispersion_estimation
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Sep 6, 2026
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Dispersion estimation
#347
stemangiola
merged 12 commits into
master
tidyomics/tidybulk:master
from
dispersion_estimation
tidyomics/tidybulk:dispersion_estimation
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Commits on Aug 22, 2026
add estimate dispersion function
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docs
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Commits on Aug 24, 2026
Enhance estimate_dispersion function to include trended dispersion and update documentation. The function now writes three columns: tagwise dispersion (dispersion_shrinked), trended dispersion (dis…
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Commits on Sep 2, 2026
Refactor glmmSeq to estimate tagwise dispersion keeping the random effects as fix effects.
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add dependencies
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Commits on Sep 5, 2026
Merge branch 'master' into dispersion_estimation
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Update estimate_dispersion to enforce fixed-effects formula usage and improve error handling.
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Merge branch 'dispersion_estimation' of https://github.com/tidyomics/tidybulk into dispersion_estimation
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Add informative messages for dispersion calculations.
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Enhance glmmTMBcore function to utilize fixed edgeR phi for dispersion estimation, ensuring consistent parameter handling across gene models.
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Update documentation for differential abundance methods to clarify usage of `formula_dispersion` and remove deprecated parameters. Adjust examples and descriptions for consistency across methods.
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Merge branch 'master' into dispersion_estimation
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