LMIB

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1. MIMA MIMA Public

   Multimodal Integration with Modality-agnostic Autoencoders - Developed by LMIB @ KU Leuven

   Jupyter Notebook 11

2. FOCUS FOCUS Public

   End-to-end preprocessing, alignment, and registration pipeline

   Python 4 1

3. pyxelperfect pyxelperfect Public

   Collection of image-processing tools for bioinformatic applications

   Python 5

4. ST-nextflow-pipeline ST-nextflow-pipeline Public

   This repository contains the entire codebase necessary to pilot STAPLE, an automated end-to-end pipeline that processes Spatial Transcriptomics datasets.

   Python 2 1

5. enteric_neuron_tools enteric_neuron_tools Public

   This repository contains both a script and a gui to process .czi images and count and segment enteric neurons that are visualized on one of the channels.

   Python