Issues

• importing omnipath from pypath results in AttributeError

  bug
  saezlab/pypath#317 · Filter by author dmalzl opened on Jun 15, 2026
  5

• Cache location

  saezlab/pypath#309 · Filter by author psl-schaefer opened on Jul 23, 2025
  1

• Can't import the core module

  bugincomplete
  saezlab/pypath#289 · Filter by author xiangpin opened on Mar 19, 2024
  1

  

• Trouble importing and accessing omnipath from pypath

  bug
  saezlab/pypath#275 · Filter by author hcl1216 opened on Dec 12, 2023
  14

  

• NicheNet LR prior knowledge

  enhancementupdate
  saezlab/pypath#274 · Filter by author dbdimitrov opened on Dec 12, 2023

• CellPhoneDB v5 (update and is_ppi flag)

  bugupdate
  saezlab/pypath#269 · Filter by author dbdimitrov opened on Nov 28, 2023
  14

  

• Mapping Yeast Uniprot/GeneSymbol/ORF issues

  bug
  saezlab/pypath#259 · Filter by author alexandre239 opened on Aug 16, 2023

• GO data retrieval gets stuck on page 670

  bug
  saezlab/pypath#253 · Filter by author ghost opened on Jul 26, 2023
  

• Conflict when merging evidences

  bug
  saezlab/pypath#249 · Filter by author marcorusc opened on Jul 3, 2023

• ValueError: I/O operation on closed file in mapping.py

  bug
  saezlab/pypath#248 · Filter by author bnymnsen opened on Jun 26, 2023
  1

  

• The complexes query reports stripped references incorrectly

  bug
  saezlab/pypath#214 · Filter by author pokedthefrog opened on Jan 9, 2023
  2

  

• Include references from PhosphoSite in the enzyme-substrate database

  enhancementfix
  saezlab/pypath#115 · Filter by author deeenes opened on Sep 25, 2019