Issues

• processQFeatures crash when using it with scpdata::brunner2022()

  rformassspectrometry/QFeaturesGUI#113 · Filter by author leopoldguyot opened on Sep 7, 2026
  2

• Update installation instructions after acceptance

  rformassspectrometry/QFeaturesGUI#109 · Filter by author lgatto opened on Jul 29, 2026
  1

• QFeaturesGUI paper

  rformassspectrometry/QFeaturesGUI#103 · Filter by author leopoldguyot opened on Jul 15, 2026

• Optimise the app for large datasets

  enhancement
  rformassspectrometry/QFeaturesGUI#67 · Filter by author leopoldguyot opened on Apr 23, 2026

• Replace custom implementation of empty set removal with dropEmptyAssays

  enhancement
  rformassspectrometry/QFeaturesGUI#62 · Filter by author leopoldguyot opened on Apr 9, 2026

• Add x slider for pca legend

  enhancement
  rformassspectrometry/QFeaturesGUI#61 · Filter by author loguille opened on Apr 8, 2026

• homogenize variabl --> snake_case into camelCase

  documentation
  rformassspectrometry/QFeaturesGUI#50 · Filter by author loguille opened on Apr 1, 2026
  

• importQFeatures: rowData colnames selector

  enhancement
  rformassspectrometry/QFeaturesGUI#49 · Filter by author leopoldguyot opened on Apr 1, 2026

• In importQFeatures, add a QFeatures plot (like summary)

  enhancement
  rformassspectrometry/QFeaturesGUI#46 · Filter by author leopoldguyot opened on Apr 1, 2026

• logTransform with a replaceSet argument

  enhancement
  rformassspectrometry/QFeaturesGUI#45 · Filter by author leopoldguyot opened on Apr 1, 2026
  1

• Optional select column as sample name in colData

  enhancement
  rformassspectrometry/QFeaturesGUI#42 · Filter by author loguille opened on Apr 1, 2026
  1

• automatic separator based on file extension

  enhancement
  rformassspectrometry/QFeaturesGUI#41 · Filter by author loguille opened on Apr 1, 2026

• Add side by side pre/post metrics plots for filtering tab

  enhancement
  rformassspectrometry/QFeaturesGUI#31 · Filter by author leopoldguyot opened on Mar 18, 2026

• Check for unique colnames in initialSets

  enhancement
  rformassspectrometry/QFeaturesGUI#24 · Filter by author leopoldguyot opened on Mar 10, 2026
  1

• harmonize assayData and colData naming in code

  enhancement
  rformassspectrometry/QFeaturesGUI#18 · Filter by author leopoldguyot opened on Feb 27, 2026

• importQFeatures: remove table button

  enhancement
  rformassspectrometry/QFeaturesGUI#17 · Filter by author leopoldguyot opened on Feb 26, 2026
  1

• Return QFeatures on exit

  enhancement
  rformassspectrometry/QFeaturesGUI#11 · Filter by author leopoldguyot opened on Jan 27, 2026
  1

• Make a pattern match option to select the quantCols

  enhancement
  rformassspectrometry/QFeaturesGUI#5 · Filter by author leopoldguyot opened on Jan 21, 2026