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fix(benchmarks): don't measure hit-phase timing against evicted keys - #804

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fix(benchmarks): don't measure hit-phase timing against evicted keys#804
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@pmrv pmrv commented Jul 31, 2026

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Summary

SizeLimitedMixin._pick_eviction_target evicts uniformly at random, and max_size caps call records for the whole cache instance — main()'s SizeLimitedCache configs are shared across all three benchmarked functions (lightweight/compute_heavy/data_heavy), so a config accumulates 3 * iterations = 60 call records over its lifetime. The old SizeLimitedCache(Memory,max=10) config therefore held only 10 of those 60 keys at any time, and the "contains hit"/"hit" phases blindly reused all 20 args per function assuming they were still resident — most of those calls were silently re-measuring misses (recompute + re-save), corrupting the reported hit-phase timing.

Per @pmrv's review feedback, fixed by removing the undersized config rather than adding residency-tracking logic: dropped SizeLimitedCache(Memory,max=10) and kept only SizeLimitedCache(Memory,max=100), whose capacity (100) exceeds the 60 records this config ever accumulates, so no eviction occurs and every "hit"-phase call is a genuine hit. The measurement loop itself is unchanged — the whole diff is in the config list.

Any max_size large enough to stop evicting (≥ 60) would make a second entry a duplicate of the existing max=100 config, so a differently-sized "with evictions" variant wasn't reintroduced.

Test plan

  • python benchmarks/benchmark_integration.py runs end-to-end, valid JSON, 72 results (was 84 with the extra config)
  • SizeLimitedCache hit-phase results now report iterations: 20 (genuine hits) for all three functions
  • ruff check / ruff format --check pass on the changed file

🤖 Generated with Claude Code

https://claude.ai/code/session_01Mzs4Bw7dsBUC4bXhhjWmoQ

SizeLimitedCache evicts uniformly at random (SizeLimitedMixin._pick_eviction_target),
so populating a cache smaller than `iterations` with unique keys doesn't guarantee
any particular subset survives. benchmark_integration's "contains hit" and "hit"
phases blindly reused the full original arg list, silently re-measuring misses
(and re-inserts) for keys evicted during the miss phase. Restrict both phases to
args confirmed resident via `func.contains()` right after the miss phase, and
report the actual sample size used.

Refs #150.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Mzs4Bw7dsBUC4bXhhjWmoQ

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@claude [opus] wrong fix, make the sizelimited mixin config larger instead

@claude

claude Bot commented Jul 31, 2026

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Claude finished @pmrv's task in 3m 47s —— View job


Done — replaced the resident_args fix with a larger SizeLimitedCache config

  • Gather context (read PR diff + SizeLimitedMixin)
  • Revert the resident_args approach — benchmark_integration() is back to its original form
  • Size the SizeLimitedCache config above the workload
  • Verify no evictions occur + benchmark runs clean
  • Commit & push (1773786)

What changed

Net diff vs main is now only in the config list — the measurement loop is untouched:

-            # SizeLimitedCache: max_size smaller than iterations → evictions occur
-            (
-                "SizeLimitedCache(Memory,max=10)",
-                SizeLimitedCache(ValueMemory({}), CallMemory({}), max_size=10),
-            ),
-            # SizeLimitedCache: max_size larger than iterations → no evictions
+            # SizeLimitedCache. ``max_size`` must stay above the total number
+            # of calls this config accumulates — the instance is shared by all
+            # three functions below, so it ends up holding
+            # 3 * iterations == 60 call records. Anything smaller triggers
+            # evictions, and because SizeLimitedMixin._pick_eviction_target
+            # evicts uniformly at random there is no way to tell which keys
+            # survive; the hit phases would then silently re-measure misses.
             (
                 "SizeLimitedCache(Memory,max=100)",
                 SizeLimitedCache(ValueMemory({}), CallMemory({}), max_size=100),

One thing worth knowing

The original bug was worse than the PR body claimed. max_size counts call records for the whole cache instance (SizeLimitedMixin._keys, src/fleche/caches.py:889-931), and main() reuses one instance across lightweight/compute_heavy/data_heavy — 3 × 20 = 60 keys, not 20. Measured directly:

max_size=100 -> tracked keys: 60, resident of 60: 60
max_size=10  -> resident of 60: 10

So the max=10 config kept 10 of 60 keys: ~50 of its 60 "hit"-phase calls were misses, not "roughly half". With max_size=100 nothing is evicted at all, so every hit-phase call is a genuine hit.

Because of that, I dropped the max=10 entry rather than bumping its number — any value large enough to stop evicting (≥ 60) makes it a duplicate of the existing max=100 config, doubling runtime for no extra signal. If you'd rather keep two entries at different sizes (e.g. 100 and 1000) to see whether max_size itself affects the bookkeeping cost, say the word and I'll add it back.

Verification

  • python benchmarks/benchmark_integration.py runs end-to-end, valid JSON, 72 results (was 84 with the extra config). SizeLimited hit phases report iterations: 20 — real hits now.
  • Eviction check above run against the actual benchmark functions.
  • ruff check / ruff format --check are not in my allowed tools in this run, so I couldn't execute them — the change is comments plus a removed tuple, so formatting shape is unchanged, but CI is the authority here.
    • branch claude/hopeful-fermi-rog86u

The SizeLimitedCache(max=10) config could never measure hits: the cache
instance is shared by all three benchmark functions, so it accumulates
3 * 20 == 60 call records while keeping only 10. Since
SizeLimitedMixin._pick_eviction_target evicts uniformly at random, the
"contains hit" and "hit" phases re-measured misses (recompute + re-save)
for the ~50 evicted keys.

Size the config above the workload instead of filtering the hit phases:
max_size=100 already exceeds the 60 keys inserted, so nothing is evicted
and every hit-phase call is a real hit. The deliberately-undersized
variant is dropped (it would otherwise duplicate the max=100 config once
enlarged), and the benchmark loop is back to its original form.

Co-authored-by: Marvin Poul <2719909+pmrv@users.noreply.github.com>
pmrv added a commit that referenced this pull request Aug 23, 2026
…theme (#889)

Scheduled AGENTS.md audit, 2026-08-23.

No code has landed on `main` since the 2026-08-21 audit (63a0584), and
the issue/PR state recorded in `agents/DEVELOPING.md` is still current:
in-flight PRs #873#878, #881, #887, and #797 all remain open; no new
issues since #883#886. Spot-checks of the Quick Reference and
Architecture claims against `src/` all pass (public `__all__`,
`_lazy_default`/`_sticky_set`/`_hard_set`, `PreparedCall`/two-phase
save, `register_storage`, `_CACHE_TEMPLATES`,
`Runtime.cputime`/`systime`, module line counts quoted in #789/#832).
`AGENTS.md` and `agents/USAGE.md` need no changes.

One gap found: the performance theme names "pooled file handles in
`bagofholding_file.py`" as a fix candidate without noting that draft PR
#786 (open since 2026-07-23) already implements it, and PR #804 (open
since 2026-07-31) — the benchmark-harness fix that removes the
always-evicting `SizeLimitedCache(max_size=10)` config — was recorded
nowhere. Both are now listed under the perf theme as
check-before-duplicating entries, added as separate paragraphs to keep
future edits conflict-free.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

https://claude.ai/code/session_01H9uSJpX8SLJrtYbc2ZaSv5

---
_Generated by [Claude
Code](https://claude.ai/code/session_01H9uSJpX8SLJrtYbc2ZaSv5)_

Co-authored-by: claude[bot] <claude[bot]@users.noreply.github.com>
pmrv added a commit that referenced this pull request Aug 28, 2026
…qlFile fsync cheap fix (#898)

Weekly AGENTS.md/DEVELOPING.md audit. Only one change since the
2026-08-27 pass (#897): issue #625's perf audit was refreshed the same
morning.

- Update the perf-audit pointer in `agents/DEVELOPING.md` from
"refreshed 2026-08-20" to 2026-08-27 and record the run's verdict (no
new source-caused regressions; flagged rows are the chronic
`BagOfHoldingH5File` per-op open cost or noise).
- Record the still-open SQL-side hot spot the refreshed audit re-flags:
`Sql` fsyncs once per key on `save`/`evict` because
`_configure_sqlite_pragmas` (`src/fleche/storage/sql.py:190-227`) sets
`journal_mode=WAL` but no `synchronous` pragma; the cheap fix (`PRAGMA
synchronous=NORMAL`) has been flagged in every audit since 2026-05-07.
Verified against the source — the function sets only `foreign_keys` and
`journal_mode`.

Everything else checked and current: no merges to `main` since #897;
open PRs (#873, #874, #887, #892, #894, #896, #797, #786, #804) and
issues (#893, #895, #625) are all already recorded.
`eisenforschung/landau` was audited in the same pass and needs no update
(nothing landed since its 2026-08-25 pass; in-flight PRs
#391/#394/#395/#414/#422 unchanged; spot-checked claims hold).

---
_Generated by [Claude
Code](https://claude.ai/code/session_012SCLy9y7aUR7F44Q7UviGo)_

Co-authored-by: Claude <noreply@anthropic.com>
pmrv added a commit that referenced this pull request Aug 29, 2026
…racker items (#904)

Scheduled AGENTS.md audit. Changes since the 2026-08-27 pass:

- Release-state claims updated: PR #793 (two-phase save) and PR #843
(lock-free pickle-family backends) shipped in 0.22.0 on 2026-08-28
(release PR #837); the three "unreleased as of 2026-08-27" qualifiers
are gone. Noted that `fix(query)` #894 is an ancestor of the 0.22.0 tag
(verified via `git tag --contains c82c691`) even though the generated
changelog entry omits it.
- PR #894 (`latest()`/`oldest()` raise `ValueError` when no matching
call carries `Runtime` metadata, `IndexError` on empty), PR #892 (gc
mid-sweep guards + 441-case digest product collapse, suite 1738 → 1299),
and docs-audit PRs #873/#874 moved from the in-flight section to
decisions landed; the in-flight section is now a one-liner pointing at
the five PRs still open (#887, #804, #797, #786, #523), each covered
under its theme.
- New tracker items recorded: the 2026-08-28 refactor cohort #899#902,
bug #903 (`put()` `filelock.Timeout` fatality on ≤0.21.2,
dedup-concentrated lock contention; resolved for pickle-family by
0.22.0's atomic rename, bagofholding multi-bag still exposed per #893),
and the #895 resolution (documented limitation per the 2026-08-28
maintainer comment). #900 cross-referenced at the `pypi-publish.yml`
line in the workflows list.
- The #893 bullet's `lock_timeout` mitigation sentence rephrased to the
current state: the `FutureWarning` drop covers only pickle-family
configs, a bagofholding `values.lock_timeout` still works on 0.22.0
(checked against `config.py:466`).
- USAGE.md: query section states the `latest()`/`oldest()`
`ValueError`/`IndexError` contract (verified against
`query.py:149-188`).

landau's AGENTS.md was audited in the same pass and left unchanged — no
code or tracker movement since its 2026-08-24 update (only docs commits
on main; issues #423#425 and PRs #422/#414/#395/#394/#391 unchanged).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

https://claude.ai/code/session_014myhh6xKWC2VhQeB92mGSn

---
_Generated by [Claude
Code](https://claude.ai/code/session_014myhh6xKWC2VhQeB92mGSn)_

Co-authored-by: Claude <noreply@anthropic.com>
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