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9 changes: 9 additions & 0 deletions inst/WORDLIST.txt
Original file line number Diff line number Diff line change
Expand Up @@ -1310,3 +1310,12 @@ zMachine
Żyła
zzz
β
Blate
DMC
agentic
formalised
recognise
stigmatising
synthesising
unblinding
unreviewed
71 changes: 71 additions & 0 deletions posts/2026-06-12-pharmaverse-ethical/appendix.R
Original file line number Diff line number Diff line change
@@ -0,0 +1,71 @@
suppressMessages(library(dplyr))
# markdown helpers --------------------------------------------------------

markdown_appendix <- function(name, content) {
paste(paste("##", name, "{.appendix}"), " ", content, sep = "\n")
}
markdown_link <- function(text, path) {
paste0("[", text, "](", path, ")")
}


# worker functions --------------------------------------------------------

insert_source <- function(repo_spec, name,
collection = "posts",
branch = "main",
host = "https://github.com",
text = "Source",
file_name) {
path <- paste(
host,
repo_spec,
"tree",
branch,
collection,
name,
file_name,
sep = "/"
)
return(markdown_link(text, path))
}

insert_timestamp <- function(tzone = Sys.timezone()) {
time <- lubridate::now(tzone = tzone)
stamp <- as.character(time, tz = tzone, usetz = TRUE)
return(stamp)
}

insert_lockfile <- function(repo_spec, name,
collection = "posts",
branch = "main",
host = "https://github.com",
text = "Session info") {
path <- path <- "https://pharmaverse.github.io/blog/session_info.html"

return(markdown_link(text, path))
}


# top level function ------------------------------------------------------

insert_appendix <- function(repo_spec, name, collection = "posts", file_name) {
appendices <- paste(
markdown_appendix(
name = "Last updated",
content = insert_timestamp()
),
" ",
markdown_appendix(
name = "Details",
content = paste(
insert_source(repo_spec, name, collection, file_name = file_name),
# get renv information,
insert_lockfile(repo_spec, name, collection),
sep = ", "
)
),
sep = "\n"
)
knitr::asis_output(appendices)
}
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