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@mpicbg-scicomp Scientific Computing Facility @ MPI-CBG

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    Repositories list

    37 repositories

    • GlobeQuant_DIA

      Public
      0•0•0•0•Updated Oct 21, 2026Oct 21, 2026

    • scion

      Public
      1•0•0•0•Updated Oct 7, 2026Oct 7, 2026

    • ipf_howtoguides

      Public
      Repo for webpage with How-To guides for image processing, created by the SCF from the MPI-CBG Dresden.
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•0•2•Updated Mar 10, 2026Mar 10, 2026

    • GlobeQuant_DDA

      Public
      0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • halcyon

      Public
      Halcyon is JavaFX framework for designing dockable multiple window applications
      Java
      •
      GNU General Public License v2.0
      •1•5•5•1•Updated Jul 12, 2025Jul 12, 2025

    • gtt

      Public
      Gitlab Time Tracker App
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated May 27, 2025May 27, 2025

    • BioImageAnalysisToolbox

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Mar 3, 2025Mar 3, 2025

    • Interactive-H-Watershed

      Public
      preview watershed results on the fly as you update segmentation parameters
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •2•8•8•0•Updated Feb 7, 2025Feb 7, 2025

    • gearshifft_results

      Public
      Collection of Results produced by Gearshifft
      R
      •2•1•1•2•Updated Nov 29, 2024Nov 29, 2024

    • GQ

      Public
      Another Global Quant
      0•0•0•0•Updated May 8, 2024May 8, 2024

    • gearshifft

      Public
      Benchmark Suite for Heterogenuous FFT Implementations
      C++
      •
      Apache License 2.0
      •10•35•15•7•Updated Jan 6, 2024Jan 6, 2024

    • ij2course-regions

      Public
      Java
      •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • ij2course-images

      Public
      Java
      •3•4•1•0•Updated Dec 14, 2021Dec 14, 2021

    • ij2course-tables

      Public
      Java
      •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • BioImageEssentialsToolbox

      Public
      Generic image processing plugins for Fiji. To be distributed via SCF update site
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

    • segmentation_3d_tools

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•2•0•Updated Nov 5, 2019Nov 5, 2019

    • mpicbg-scicomp.github.io

      Public
      MPI-CBG Scientific Computing Facility
      0•1•0•0•Updated Jan 14, 2019Jan 14, 2019

    • tissue_miner

      Public
      A toolkit to quantify cell dynamics in living tissues
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •9•13•10•1•Updated Dec 18, 2018Dec 18, 2018

    • snakemake-workflows

      Public
      snakemake workflows produced, tested and used at MPI CBG
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•7•5•0•Updated Nov 22, 2018Nov 22, 2018

    • phylo-io

      Public
      Phylo.IO JS tree viewer
      JavaScript
      •
      MIT License
      •13•0•0•0•Updated Jul 10, 2018Jul 10, 2018

    • CourseIntroToIA

      Public
      3•8•0•0•Updated Dec 1, 2017Dec 1, 2017

    • dlbc17-python-intro

      Public archive
      Python
      •
      Other
      •18•2•0•0•Updated Aug 21, 2017Aug 21, 2017

    • Manual_drift_correction

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•0•Updated Jul 13, 2017Jul 13, 2017

    • ij2course-scijava-plugin-mechanism

      Public
      Java
      •0•0•0•0•Updated Jun 23, 2017Jun 23, 2017

    • gearshifft_publication

      Public
      Publication Manuscript for results obtained with gearshifft
      TeX
      •
      Other
      •1•0•2•0•Updated Jun 20, 2017Jun 20, 2017

    • imagej-legacy

      Public
      Backwards compatibility with ImageJ 1.x
      Java
      •
      Other
      •27•0•0•0•Updated May 17, 2017May 17, 2017

    • imagej-table-charts

      Public
      Java
      •1•0•0•0•Updated Jan 30, 2017Jan 30, 2017

    • scijava-common

      Public
      A plugin framework and application container with built-in extensibility mechanism.
      Java
      •
      Other
      •53•0•0•0•Updated Dec 30, 2016Dec 30, 2016

    • imagej-tutorials

      Public
      ImageJ2 programming examples
      Java
      •116•0•0•0•Updated Dec 10, 2016Dec 10, 2016

    • ThreeDViewer

      Public
      ThreeDViewer is an ImageJ/FIJI plugin for visualization and interaction with 3D data
      Java
      •
      BSD 2-Clause "Simplified" License
      •20•0•0•0•Updated Dec 9, 2016Dec 9, 2016
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