Repositories list

• idr-zarr-conversion

  Public
  Python

  •11 fork•00 stars•2222 issues•11 pull request•Updated Oct 6, 2026Oct 6, 2026

• upptime

  Public
  Uptime monitor and status page for IDR, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• idr.openmicroscopy.org

  Public
  Source for the IDR static website.

  jekyll-siteidr

  jekyll-siteidr

  HTML

  •

  Creative Commons Attribution 4.0 International

  •1616 forks•44 stars•1111 issues•11 pull request•Updated Oct 2, 2026Oct 2, 2026

• idr0111-lee-cellmigration

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2026Oct 1, 2026

• idr-utils

  Public
  Utility scripts for managing IDR submissions

  Python

  •

  BSD 2-Clause "Simplified" License

  •77 forks•22 stars•77 issues•55 pull requests•Updated Sep 18, 2026Sep 18, 2026

• omero-mkngff

  Public
  Plugin to swap OMERO filesets with NGFF

  Python

  •

  GNU General Public License v2.0

  •22 forks•00 stars•22 issues•00 pull requests•Updated Sep 9, 2026Sep 9, 2026

• idr-gallery

  Public
  JavaScript

  •

  GNU Affero General Public License v3.0

  •1515 forks•11 star•99 issues•33 pull requests•Updated Jun 26, 2026Jun 26, 2026

• idr-notebooks

  Public
  Jupyter Notebooks for the Image Data Resource

  jupyternotebook

  jupyternotebook

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •2020 forks•2020 stars•66 issues•33 pull requests•Updated Jun 25, 2026Jun 25, 2026

• ome-ngff-samples

  Public
  A catalog of all public OME-NGFF representative samples derived from IDR data

  idrzarrngff

  idrzarrngff

  HTML

  •55 forks•22 stars•22 issues•11 pull request•Updated May 20, 2026May 20, 2026

• idr-metadata

  Public
  Curated metadata for all studies published in the Image Data Resource

  yamlmetadatacsv+ 1

  yamlmetadatacsvstudies

  Python

  •2525 forks•1717 stars•3232 issues•33 pull requests•Updated May 19, 2026May 19, 2026

• idr0171-kuzikov-remedi4all

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• idr0167-li-cellcyclenet

  Public
  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• idr0051-fulton-tailbudlightsheet

  Public
  Metadata files for the idr0051 submission

  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• deployment

  Public
  Deployment infrastructure for the Image Data Resource

  infrastructureansibleinventory+ 1

  infrastructureansibleinventoryplaybook

  Python

  •

  BSD 2-Clause "Simplified" License

  •1414 forks•1414 stars•1919 issues•33 pull requests•Updated Feb 21, 2026Feb 21, 2026

• idr0168-zhang-mllocalization

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 5, 2025Dec 5, 2025

• idr0173-breiter-alphasynuclein

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 5, 2025Dec 5, 2025

• idr0170-rose-mibitof

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 11, 2025Aug 11, 2025

• idr0151-clark-patterning

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2025Jul 17, 2025

• repos

  Public
  A super-module of all the repositories used for building the IDR

  git

  git

  Shell

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jul 10, 2025Jul 10, 2025

• idr0108-sabinina-nuclearporecomplex

  Public
  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 30, 2025Jun 30, 2025

• idr0125-way-cellpainting

  Public
  Shell

  •11 fork•00 stars•22 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• idr0156-szabo-tadcnd

  Public
  Temporary repository for "Szabo - TAD" submission. Rename or delete later.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2025May 16, 2025

• idr0160-lippincott-pyroptosis

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2025May 16, 2025

• idr0164-alzubi-hdbr

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2025May 16, 2025

• vocabulary

  Public
  22 forks•00 stars•00 issues•00 pull requests•Updated May 8, 2025May 8, 2025

• idr0165-duinkerken-hyperspectraledx

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2025Apr 25, 2025

• idr0157-peters-bryophytes

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2025Apr 24, 2025

• idr0159-strobl-insectlightsheet

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2025Mar 24, 2025

• idr0150-friedman-cafs

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• idr0163-greenwald-tnbc

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025