Add example7: negative growth rates and the zero boundary (#193) - #243

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negsgr-cens-vignette

Sep 15, 2026

Commits on Aug 13, 2026

document what a censored likelihood cannot recover
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178d413

Commits on Aug 17, 2026

correct three quoted figures in the saturation subsection

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4df470e

Commits on Aug 18, 2026

add example7: negative response values

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e45be25
example7: report structure, corrected terminology, review fixes

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example7: methods for the two family-floored approaches

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example7: results for all eight approaches

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6320d93

Commits on Aug 20, 2026

example7: results at 500 iterations

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8dc898b

Commits on Aug 23, 2026

example7: whether model averaging rescues the floored approaches

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099d867

Commits on Aug 24, 2026

example7: name the weighting method, and correct it

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example7: drop the stacking re-run caveat

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example7: cite the simulation compendium by URL and pinned commit

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merge dev into the example7 branch; keep both new bib entries

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example7, example1: scientific report style, and cut the repeated nec4param case

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Merge remote-tracking branch 'origin/dev' into negsgr-cens-vignette
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example7: address review findings, and record the vignette in NEWS

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bb97754

Commits on Aug 25, 2026

example7: check the homoscedastic assumption, and rework the case studies onto alga

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precompile: report the whole error, not just the wrapped first line

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precompile: install the Stan headers, without which no vignette can fit

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example7: precompile the alga case studies, and fix what that exposed

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Merge remote-tracking branch 'origin/dev' into negsgr-cens-vignette
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gitignore figures knitted at the repo root

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0a8b5d3

Commits on Sep 7, 2026

example7: prose and heading pass, and cut duplicated material

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example7: one more ruled verb

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add the example7 rewrite specification

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example7: trim the flooring routes sentence

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Merge remote-tracking branch 'origin/dev' into negsgr-cens-vignette
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9b56aff

Commits on Sep 8, 2026

rewrite example7 against the revised ecx and candidate-set defaults

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example7: correct four headings against the section 13 patterns

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example7: restructure against review, and add the averaging figure

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example7: one simulation section, and drop the bridging sentence

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example7: move narration to the house first-person style

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example7: restore the front matter and the Phase 10 provenance comment

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example7: second review round

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example7: add arms E and F to the case studies, drop arm D, cut the regime split

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example7: say what arm D truncates, and record the practice it is not

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2f48aae

Commits on Sep 10, 2026

example7: rewrite against the model-averaged simulation study

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Commits on Sep 11, 2026

example7: transcribe the case studies, and record what that costs

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Commits on Sep 12, 2026

example7: the numbers from the re-run, and four claims the data no longer support

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example7: replace the asserted Gamma mechanism with a measured one

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6dda3d3

Commits on Sep 14, 2026

example7: measure the Gamma's variance over 100 realisations, not one fit

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example7: the weights are pseudo-BMA, not stacking

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bc1fd51
example7: the dispersion sub-model was exercised, and is not reported

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035e2ec

Commits on Sep 15, 2026

refresh the reported results against the re-run study

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Merge remote-tracking branch 'origin/dev' into negsgr-cens-vignette
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