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Reclassify eyelid as external soft tissue zone with explicit tissue relationships #3643

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Reclassify eyelid as external soft tissue zone with explicit tissue relationships #3643

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af89fa1
Fixes #3640 to correctly classify eyelid as a facial skin
aleixpuigb Dec 17, 2025
9e9e4e5
Improve 'eyelid' definition to include also non-skin structures
aleixpuigb Dec 17, 2025
8d45b56
Initial plan
Copilot Jan 5, 2026
399e728
Document analysis of eyelid term classification feedback
Copilot Jan 5, 2026
c50a459
Reclassify eyelid as external soft tissue zone following prepuce pattern
Copilot Jan 5, 2026
1ffe150
Rewrite eyelid definition to be applicable to all species
aleixpuigb Jan 20, 2026
83ee55d
Merge branch 'master' into 3640_eyelid_hierarchy
aleixpuigb Jan 20, 2026
3260691
Merge branch 'master' into 3640_eyelid_hierarchy
aleixpuigb Jan 21, 2026
64e3804
Merge branch '3640_eyelid_hierarchy' into copilot/sub-pr-3641
aleixpuigb May 11, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -260,3 +260,4 @@ src/ontology/subsets/*.tsv
src/ontology/imports/*_import.owl
!src/ontology/imports/orcidio_import.owl
/site/*
/tools/
6 changes: 4 additions & 2 deletions src/ontology/uberon-edit.obo
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Expand Up @@ -28964,7 +28964,7 @@ property_value: homology_notes "Subsequent vertebrate evolution has also involve
[Term]
id: UBERON:0001711
name: eyelid
def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane." [http://orcid.org/0000-0002-6601-2165]
def: "A movable or semi-movable ocular covering that protects the eye and contributes to surface maintenance; structure and composition vary widely among vertebrate species." [http://orcid.org/0000-0002-6601-2165, PMID:29493929]
subset: pheno_slim
subset: uberon_slim
synonym: "blephara" RELATED OMO:0003004 []
Expand All @@ -28986,10 +28986,12 @@ xref: SCTID:265782007
xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"}
xref: VHOG:0000016
xref: Wikipedia:Eyelid
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0034929 ! external soft tissue zone
relationship: capable_of GO:0060082 ! eye blink reflex
relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye
relationship: fma_set_term FMA:75178
relationship: has_part UBERON:0001457 ! skin of eyelid
relationship: has_part UBERON:0001812 ! palpebral conjunctiva
relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye
relationship: protects UBERON:0010409 ! ocular surface region
property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg" xsd:anyURI
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