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Configbuilder: nf-core configs create - #3949

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mirpedrol wants to merge 155 commits into
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configbuilder
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Configbuilder: nf-core configs create#3949
mirpedrol wants to merge 155 commits into
devfrom
configbuilder

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@mirpedrol

@mirpedrol mirpedrol commented Dec 1, 2025

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Adding the new nf-core configs create command

jfy133 and others added 30 commits May 25, 2024 21:18
@jfy133
Add basic skeleton with welcome screen
e93b45a
@jfy133
Update changelgo
266a163
@jfy133
Fix linting failure
71a1475
@jfy133
Linting
a583018
@jfy133
Move common util functions/classes to common location
5e1dc52
@jfy133
Move textual CSS to common place
03eaa52
@jfy133
Add config type question
b82b6fb
@jfy133
Start adding basic details screen. Missing: validation. Not working: …
5f6b2a4 
…Hide URL Question of pipeline configs
@jfy133
Merge branch 'dev' into configbuilder2
e8233f5
@jfy133
Fix function calling due to move to generic location
17971e6
@jfy133
Copy over @mirpedrol 's writing functions
15f5be8
@jfy133
Start making config writing function actually write nextflow configs
4af6e99
@jfy133
Add URL saving, start adding validation: problem unless everything fi…
2d7863a 
…lled in 'NoneType + str' error
@jfy133
Merge branch 'dev' into configbuilder2
edc2d8f
@jfy133
Merge branch 'dev' into configbuilder2
e01c486
@jfy133
Small debugging, now know the issue
f0cb5e9
@jfy133
Fixing writing of parameters to the input file when no input from user
66227b7
@mirpedrol
Merge branch 'dev' of https://github.com/nf-core/tools into configbui…
f8ad151 
…lder2
@mirpedrol @jfy133
Add back configs create command
46c4c0a 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
@mirpedrol
update to new version of textual and rename CreateConfig classes
dc22d8f
@mirpedrol
add screen asking if the config is nf-core
544fd89
@mirpedrol
add validation of basicdetails
33e88dd
@mirpedrol
conditional validation for nf-core configs
227abc2
@mirpedrol
Merge branch 'dev' into configbuilder2
954b263
@mirpedrol
remove config author and url from pipeline configs
48ce7a5
@mirpedrol
fix custom fields using hide class and add pipeline name or path
078520a
@mirpedrol
add screen to select if config is for an HPC or not
a55d26b
@mirpedrol
Merge branch 'dev' of https://github.com/mirpedrol/tools into configb…
b143b30 
…uilder2
@mirpedrol
use 'local' for no HPC
b0ad759
@mirpedrol
add HPC configuration screen
d557970
mgeaghan added 17 commits May 11, 2026 15:59
@codspeed

codspeed Bot commented Jul 9, 2026 •
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Merging this PR will not alter performance

✅ 9 untouched benchmarks

Comparing configbuilder (f18644a) with dev (df38c6d)

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configbuilder: nf-core configs create
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New functionality: nf-core config create (configbuilder)

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@mirpedrol @jfy133 @mgeaghan @fredjaya @nbtm-sh @amarinderthind @nf-core-bot