Issues

• Question:How to remove disconnected microstates in MSMbuilder?

  msmbuilder/msmbuilder-legacy#459 · Filter by author zhoushuangyan opened on Jun 8, 2015

• InteractiveSCRE.py is outdated/broken

  msmbuilder/msmbuilder-legacy#451 · Filter by author vvoelz opened on Nov 20, 2014
  2

• SaveRawStructure.py into msmbuilder 2.8

  msmbuilder/msmbuilder-legacy#447 · Filter by author sryckbos opened on Oct 25, 2014
  1

• Bug in BACE_Coarse_Graining.py?

  msmbuilder/msmbuilder-legacy#446 · Filter by author rosmarin opened on Oct 21, 2014

• SaveStructures ignores boolean argument --replacement

  msmbuilder/msmbuilder-legacy#444 · Filter by author Trayder opened on Oct 15, 2014

• What are the units of distance in dihedral clustering?

  docs
  msmbuilder/msmbuilder-legacy#443 · Filter by author vvoelz opened on Oct 8, 2014
  2

• PCCA contains deprecated method

  msmbuilder/msmbuilder-legacy#442 · Filter by author Zsailer opened on Sep 24, 2014

• Clustering by contacts fails with varying errors

  msmbuilder/msmbuilder-legacy#441 · Filter by author Trayder opened on Sep 16, 2014

• Human readable Assignments.h5

  msmbuilder/msmbuilder-legacy#438 · Filter by author chelino85 opened on Sep 9, 2014
  2

• travis failing

  msmbuilder/msmbuilder-legacy#437 · Filter by author schwancr opened on Sep 8, 2014
  1

• entry_point() in script creates a limbo for untested code

  msmbuilder/msmbuilder-legacy#436 · Filter by author schwancr opened on Sep 8, 2014

• Chapman-Kolmogorov

  msmbuilder/msmbuilder-legacy#434 · Filter by author chelino85 opened on Sep 8, 2014
  1

• Bootstrapping on Implied Timescales

  msmbuilder/msmbuilder-legacy#432 · Filter by author s-gordon opened on Aug 25, 2014
  1

• msm_analysis.sample input matrix types

  msmbuilder/msmbuilder-legacy#430 · Filter by author apeck12 opened on Jul 16, 2014

• Using list of states in a file as an input for SaveStructures

  msmbuilder/msmbuilder-legacy#426 · Filter by author diwakarshukla opened on Jun 17, 2014

• CalculateImpliedTimescales.py: Abnormal termination of BFGS likelihood maximization. Error code 2

  msmbuilder/msmbuilder-legacy#425 · Filter by author davidshorthouse opened on Jun 12, 2014
  2

• Use RMSD clustering without alignment?

  msmbuilder/msmbuilder-legacy#424 · Filter by author alexrd opened on Jun 5, 2014

• CalculateImpliedTimeScale failed with "k must be between 1 and ndim(A)-1"

  msmbuilder/msmbuilder-legacy#420 · Filter by author Serilin opened on May 25, 2014
  4

• Pairwise RMSD of a Macro-state MSM network

  msmbuilder/msmbuilder-legacy#418 · Filter by author daviddaileo opened on May 20, 2014
  8

• Section headers don't look like headers in Sphinx theme

  msmbuilder/msmbuilder-legacy#413 · Filter by author kyleabeauchamp opened on May 6, 2014
  2

• problem about ConvertDataToHDF.py command

  msmbuilder/msmbuilder-legacy#410 · Filter by author smileyujun opened on Apr 16, 2014

• CreateAtomIndices.py doesn't recognize residue name CYM (deprotonated cysteine)

  msmbuilder/msmbuilder-legacy#409 · Filter by author sryckbos opened on Apr 15, 2014
  1

• Confusing percentages printed in BuildMSM.py

  msmbuilder/msmbuilder-legacy#404 · Filter by author dvanatta opened on Apr 3, 2014
  3

• Copyright should be updated to 2014

  msmbuilder/msmbuilder-legacy#403 · Filter by author jimsnyderjr opened on Apr 3, 2014

• Feature request: separate alignment and rmsd

  msmbuilder/msmbuilder-legacy#399 · Filter by author gbowman opened on Apr 2, 2014
  4