Mixlen refactoring: Remove dependency on ModelFactoryMixlen and cppoptlib, add support for the -ft option - #182

Merged

bqminh merged 6 commits into

iqtree:masterfrom

StefanFlaumberg:fixmixlen

Sep 10, 2026

Commits on Jul 7, 2026

Merge ModelFactoryMixlen into ModelFactory
StefanFlaumberg
committed
891edb1
Remove the cppoptlib dependency and fix PhyloTreeMixlen initialization
StefanFlaumberg
committed
e03d266
Make the -ft option work for mixture models with GHOST rates
StefanFlaumberg
committed
e4306ad

Commits on Jul 9, 2026

Fix getNBranchParameters(), simplify save/restoreBranchLengths(), rename getMixlen() to getNMixlen()
StefanFlaumberg
committed
5ae0e1a

Commits on Jul 23, 2026

Fix crashing when using GHOST with a partitioned/mixed-datatype simulation reported at #537 (in the iqtree2 repo) because of a deleted tree pointer
trongnhanuit
committed
4091e10

Commits on Sep 9, 2026

Merge at and revert commit 4091e10
StefanFlaumberg
committed
9e75432