Issues

• Link to tutorial broken

  im3sanger/dndscv#113 · Filter by author wlippa opened on Sep 4, 2026

• issue running dndscv

  im3sanger/dndscv#112 · Filter by author xingwenchen opened on Aug 24, 2026
  2

• Reusing pre-fitted background model

  im3sanger/dndscv#111 · Filter by author StevenWijnen opened on Apr 23, 2026
  2

• issues with glm.nb/Error in while ((it <- it + 1) < limit && abs(del) > eps) when using a custom annotation file

  im3sanger/dndscv#110 · Filter by author choulin2 opened on Oct 17, 2025

• Can you apply dNdScv to ctDNA data?

  im3sanger/dndscv#109 · Filter by author ewigmore2 opened on Aug 4, 2025

• Error in if (strand == 1) { : 参数长度为零

  im3sanger/dndscv#108 · Filter by author Frank1219 opened on Jul 16, 2025
  3

• Query about same mutations in primary tumour and metastatic tumour sample pairs?

  im3sanger/dndscv#106 · Filter by author ses101-24 opened on Apr 24, 2025

• How to get a single dN/dS value for a gene for all non-synonymous substitutions (missense, nonsense, and essential splice site)

  im3sanger/dndscv#105 · Filter by author LonaLion opened on Mar 26, 2025

• Method for generating covariate matrix from Roadmap Epigenomics?

  im3sanger/dndscv#104 · Filter by author danieljrichard opened on Feb 23, 2025

• Double base substitutions annotation

  im3sanger/dndscv#102 · Filter by author andreyurch opened on Nov 7, 2024
  1

• Error for mitochondrial refcds

  im3sanger/dndscv#101 · Filter by author moshl opened on Nov 4, 2024

• Genes missing in hg38 ref file

  im3sanger/dndscv#100 · Filter by author sahilseth opened on Oct 25, 2024

• How do I run Duplex sequence results with dndscv/

  im3sanger/dndscv#99 · Filter by author zongdawu opened on Oct 17, 2024

• Error loading the hg38 reference database and the hg38 covariate files

  im3sanger/dndscv#94 · Filter by author gat2010 opened on Feb 17, 2024
  1

• question about confidence interval for INDELs

  im3sanger/dndscv#91 · Filter by author loipf opened on Jun 18, 2023
  3

• Problems encountered in using DNDSCV：[E::faidx_fetch_seq2] Failed to retrieve block. (Seeking in a compressed, .gzi unindexed, file?) Error in h(simpleError(msg, call)) : 在为'strsplit'函数选择方法时评估'x'参数出了错: record 1 (9:12285795-12285926) failed

  im3sanger/dndscv#88 · Filter by author manchengyanyu opened on Mar 20, 2023

• estimating global dNdSCV ratios from subsets of coding mutations

  im3sanger/dndscv#81 · Filter by author bkinnersley opened on Jun 9, 2022
  2

• The meaning of 'tml' in the 'dndscv.R'

  im3sanger/dndscv#80 · Filter by author SunsqLab opened on May 26, 2022

• No genes with qglobal_cv < 0.1

  im3sanger/dndscv#69 · Filter by author kvn95ss opened on Aug 23, 2021
  7

• Name clash error on load

  im3sanger/dndscv#57 · Filter by author luca-dex opened on Sep 30, 2020

• Error in RefCDS[[j]] : subscript out of bounds

  im3sanger/dndscv#55 · Filter by author CraigJAnderson opened on Jul 17, 2020
  2

• any plans to generate covariates for hg38?

  im3sanger/dndscv#30 · Filter by author pwaltman opened on May 22, 2019
  14