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Isofox changes for Ultima support (AUS-418) - #893

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shiv-hartwig wants to merge 29 commits into
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AUS418-isofox-ultima-refactor
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shiv-hartwig wants to merge 29 commits into
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AUS418-isofox-ultima-refactor

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@shiv-hartwig

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charlesshale and others added 28 commits June 19, 2026 12:37
- removed BamReadCounter
- updated retained intron finder to write TSV
- updated read-me for Tars+Redux changes
@shiv-hartwig
shiv-hartwig force-pushed the AUS418-isofox-ultima-refactor branch from 79e3c9c to 6dfc453 Compare October 6, 2026 00:06
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