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AUS419 purple ffpe - #885

Merged

charlesshale merged 41 commits into

AUS419-purple-ffpe

Sep 15, 2026

Commits on Jun 19, 2026

Esvee: removed private method only
charlesshale
committed
ad30f46

Commits on Jun 22, 2026

Esvee: removed redundant code
charlesshale
committed
238af7a
Esvee: removed private method
charlesshale
committed
17c222e
Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
bdf6af9

Commits on Jun 23, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
6720c4d

Commits on Jun 26, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
dff3459

Commits on Jun 29, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
18d9387

Commits on Jun 30, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
2eb5549

Commits on Jul 2, 2026

Commits on Jul 13, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
0ddfcf8

Commits on Jul 15, 2026

Commits on Jul 16, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
82aa9a4

Commits on Jul 23, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
d526cba

Commits on Jul 26, 2026

Merge branch 'master' of https://github.com/hartwigmedical/hmftools
charlesshale
committed
a33829e

Commits on Jul 28, 2026

Purple: clean-up only
charlesshale
committed
b130e20

Commits on Aug 4, 2026

Purple: resegmentation calc penalty
charlesshale
committed
5c1ae6a

Commits on Aug 7, 2026

Purple: added resegmentation routine
charlesshale
committed
ffd8f6c

Commits on Aug 8, 2026

Purple: added resegmentation tests
charlesshale
committed
e902948

Commits on Aug 12, 2026

Linx: disruption drivers use likelihood 1 if undisrupted copies < 0.5
charlesshale
committed
22a6e32

Commits on Aug 14, 2026

Commits on Aug 15, 2026

Purple: reseg blend final diploid regions
charlesshale
committed
864c66a

Commits on Aug 17, 2026

Commits on Aug 19, 2026

Purple: reseg minor change to blending
charlesshale
committed
78c573b
Purple: reseg do gc norm before calculating penalty
charlesshale
committed
0875abf

Commits on Aug 20, 2026

Commits on Aug 25, 2026

Purple: resegmentation on by default for non-panel, fixed minor reseg issue
charlesshale
committed
8eab3fa

Commits on Aug 26, 2026

Purple:
charlesshale
committed
7b85c18

Commits on Aug 27, 2026

Purple: reseg minor fix for handling skipped regions
charlesshale
committed
4f6eb7f

Commits on Aug 31, 2026

Commits on Sep 2, 2026

Commits on Sep 15, 2026