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Get guacamole and friends building on newest batch of shared libraries

infrastructure

Status: Open.

#616 In hammerlab/guacamole;

· hammer opened on Dec 17, 2016

Make indel realignment splice aware

Status: Open.

#615 In hammerlab/guacamole;

· hammer opened on Dec 8, 2016

--loci argument conflicts with TakeLociIterator

Status: Open.

#611 In hammerlab/guacamole;

· arahuja opened on Oct 26, 2016

throwed exception: ./scripts/guacamole: line 39 :exec: time: not found

Status: Open.

#572 In hammerlab/guacamole;

· car2008 opened on Sep 9, 2016

Move to Spark 2.0

Status: Open.

#566 In hammerlab/guacamole;

· arahuja opened on Sep 1, 2016

Send relevant reference sequences to executors in more fine-grained ways than via a Broadcast

infrastructure

Status: Open.

#560 In hammerlab/guacamole;

· ryan-williams opened on Aug 20, 2016

Allow receiving inputs from config files

infrastructure

Status: Open.

#553 In hammerlab/guacamole;

· ryan-williams opened on Aug 15, 2016

Remove progress helper, use Spark/log4j

enhancement

infrastructure

Status: Open.

#551 In hammerlab/guacamole;

· ryan-williams opened on Aug 15, 2016

Test running on Baylor "case 2" dataset

validation

Status: Open.

#548 In hammerlab/guacamole;

· ryan-williams opened on Aug 15, 2016

Allow reference file to be loaded from HDFS or GS

infrastructure

Status: Open.

#512 In hammerlab/guacamole;

· arahuja opened on Jul 28, 2016

Is there any way we can get the quali and filter information in the vcf file.

Status: Open.

#470 In hammerlab/guacamole;

· ankushreddy opened on May 2, 2016

consider supporting other output formats (csv, json, arrow?) in joint caller

infrastructure

Status: Open.

#447 In hammerlab/guacamole;

· timodonnell opened on Apr 22, 2016