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bam_left_align's ~reference_build argument?

question

Status: Open.

#477 In hammerlab/biokepi;

· smondet opened on Jul 5, 2017

Better estimate each job's resource requirements and encode them into Biokepi as defaults

enhancement

Status: Open.

#476 In hammerlab/biokepi;

· armish opened on Jun 26, 2017

Topiary fails to auto-detect reference genome for Varscan VCFs

Status: Open.

#475 In hammerlab/biokepi;

· armish opened on Jun 23, 2017

MuTect2 can silently fail and output an empty VCF

bug

Status: Open.

#471 In hammerlab/biokepi;

· ihodes opened on May 25, 2017

Add Bfx.validate_bam

target library

Status: Open.

#462 In hammerlab/biokepi;

· tavinathanson opened on May 2, 2017

Move more Input.t constructors into Biokepi

enhancement

Status: Open.

#461 In hammerlab/biokepi;

· ihodes opened on May 2, 2017

Fill in the gaps to cover the most basic needs of a bfx pipeline

enhancement

target library

Status: Open.

#451 In hammerlab/biokepi;

· armish opened on Apr 19, 2017

Fix hlarp hack

Status: Open.

#447 In hammerlab/biokepi;

· hammer opened on Apr 4, 2017

Save JSON/CSV manifests automatically

enhancement

Status: Open.

#444 In hammerlab/biokepi;

· tavinathanson opened on Mar 27, 2017

Cufflinks segfaults on every run

tool-bug

Status: Open.

#442 In hammerlab/biokepi;

· tavinathanson opened on Mar 24, 2017

Use new hg19 we host

bug

Status: Open.

#433 In hammerlab/biokepi;

· ihodes opened on Feb 27, 2017

Implement OptiType pre-filtering step

enhancement

Status: Open.

#426 In hammerlab/biokepi;

· tavinathanson opened on Feb 14, 2017