Mesh Adaptivity via DMPlexTransform - #5215

Merged

pbrubeck merged 113 commits into

mainfrom

pbrubeck/mg-redist

Jul 31, 2026

Commits on Jul 2, 2026

Support -snes_adapt
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5ff2783

Commits on Jul 3, 2026

Support -snes_adapt
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1c7406a
Native/redistributed transfer for AdaptiveMeshHierarcy
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b4153b7
cleanup
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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Works in serial
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WIP: RedistMesh
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Deprecate AdaptiveTransferManager
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885a7eb
WIP struggled a lot with injection
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c8b3473
remove anti-patterns
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2e0ef75

Commits on Jul 4, 2026

workaround
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fix parallel
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e24125e
add failing redistribution test
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6c37126
cleanup
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c9fba85
Redistributed MeshHierarchy
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f978cf9
refactoring, and some FIXMEs
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4e4bbeb
Fix RedistMesh + AdaptiveMeshHierarchy
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a810d2f

Commits on Jul 5, 2026

refactoring
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3df8ca5

Commits on Jul 6, 2026

reconstruct coefficient in either direction
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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cleanup
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631889c
move code around
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2c01147
reuse MeshTopology._set_partitioner
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fc16d28
expose the distribution_parameters
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0d3aaef
test second level
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6ad926e
Fix compositions of MeshHierarchy and AdaptiveMeshHierarchy
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ba9bfb4

Commits on Jul 7, 2026

DMPlex.adaptLabel
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2986a7b
Use DMPlex.adaptLabel()
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restore redistribution
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9bd0dfb
Refactoring
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08957f9

Commits on Jul 8, 2026

Enable 3D (tetrahedron) support for refine_sbr adaptive refinement

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7a2fa1a
Drop adapt label

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4b96edc
cleanup
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1aa43b5
cleanup tests
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c6d1474
Fix adaptive injection
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f3236b5
Apply suggestions from code review
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b80cb8f
cleanup
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b42e28d
cleanup
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8f83483
basic test
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651804e

Commits on Jul 9, 2026

Commits on Jul 10, 2026

Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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Apply review suggestions: defer coefficient prolongation to transfer hook

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0b4a188
Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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Apply review suggestions: split MeshHierarchy into three stages

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Apply follow-up review suggestions to MeshHierarchy

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6cc4489
Apply review suggestions to interface.py, adapt.py, and redist.py

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Apply further review suggestions to mesh.py, adapt.py, netgen.py

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Apply suggestions from code review
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098ca74
Apply suggestion from @pbrubeck
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3e21650
Apply suggestion from @pbrubeck
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5a0306a
Apply suggestion from @pbrubeck
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f3d5e67
Apply suggestions from code review
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fixes
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Apply suggestions from code review
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b25d720
Apply suggestion from @pbrubeck
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0c87d21
Apply suggestions from code review
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9be2fbe
Apply suggestion from @pbrubeck
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60aa61b
fix inject
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7b4f5d8
Deterministic tests
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5e9b4cb
API improvements
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2fe1c33

Commits on Jul 13, 2026

cythonize, remove balancing-based redistribution
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96e24f9

Commits on Jul 16, 2026

Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
pbrubeck
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04bf785

Commits on Jul 20, 2026

Apply suggestions from code review
pbrubeck
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82af367

Commits on Jul 21, 2026

Merge branch 'main' into pbrubeck/snes-adapt
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review comments
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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Apply suggestion from @pbrubeck
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c1b2ef1
Apply suggestions from code review
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fc7f092
set adaptive criterion when we detect a marking_callback
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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231ed2c
Split mesh redistribution into a separate branch

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claude
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Apply suggestions from code review
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459a2a0

Commits on Jul 22, 2026

Apply suggestions from code review

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connorjward
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review suggestions
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tidy
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get_relative ensures that hierarchy is the same
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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Merge branch 'main' into pbrubeck/snes-adapt
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Fix
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2709cea

Commits on Jul 23, 2026

Fix a workaround for Real space
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Make code less pythonic
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review suggestions
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Apply suggestion from @pbrubeck
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dd2303e
reverse kwarg
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Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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purge AdaptiveTransferManager
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115ac32

Commits on Jul 24, 2026

Merge branch 'main' into pbrubeck/snes-adapt
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1d99930

Commits on Jul 26, 2026

Merge branch 'pbrubeck/snes-adapt' into pbrubeck/mg-redist
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1cf9f3c

Commits on Jul 27, 2026

Merge branch 'pbrubeck/mg-redist' of github.com:firedrakeproject/firedrake into pbrubeck/mg-redist
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merge conflict
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drop redist
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petsctools.inserted_options
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docstrings
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drop redist
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Cython memory view, fixes for petsctools.inserted_options
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more comments
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Apply suggestions from code review

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connorjward
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c5fc2f9
comments
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ef5aed1
make code more readable
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b74153e
petsctools main
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21f4ab7
Fix test that broke after splitting redistribution
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abdc3a1

Commits on Jul 28, 2026

remove netgen fix
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2813f24

Commits on Jul 29, 2026

Merge branch 'main' into pbrubeck/mg-redist
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1dae5ad

Commits on Jul 30, 2026

Fuse AdaptiveMeshHierarchy into MeshHierarchy

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Merge remote-tracking branch 'origin/main' into pbrubeck/mg-redist
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review suggestions
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Merge branch 'main' into pbrubeck/mg-redist
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e0e8ea1
Apply suggestion from @pbrubeck
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5761390
Clarify why _transfer_high_order_coordinates clones the plex

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remove clone
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