Companion PR to EB#4146: Adjust Julia's and Julia-based easyconfigs to match new Easyblocks

easybuild/easyconfigs/c/Circuitscape/Circuitscape-5.12.3-Julia-1.7.2.eb

@@ -11,7 +11,7 @@ description = "Algorithms from circuit theory to predict connectivity in heterog
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, True),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
@@ -396,9 +396,8 @@ exts_list = [
     (name, version, {
         'source_urls': ['https://github.com/Circuitscape/Circuitscape.jl/archive/'],
         'checksums': ['1eb5b6f5711865792204677359c1b9d9247ae3f34af42f58dfe2ec4ad3dd2177'],
+        'runtest': True,
     }),
 ]
 
-sanity_check_commands = ["julia -e 'using Pkg;Pkg.test(\"Circuitscape\")'"]
-
 moduleclass = 'lib'

easybuild/easyconfigs/c/Circuitscape/Circuitscape-5.12.3-Julia-1.9.2.eb

@@ -11,7 +11,7 @@ description = "Algorithms from circuit theory to predict connectivity in heterog
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, True),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
@@ -400,13 +400,8 @@ exts_list = [
     (name, version, {
         'source_urls': ['https://github.com/Circuitscape/Circuitscape.jl/archive/'],
         'checksums': ['1eb5b6f5711865792204677359c1b9d9247ae3f34af42f58dfe2ec4ad3dd2177'],
+        'runtest': True,
     }),
 ]
 
-_julia_env = "%(installdir)s/environments/v" + '.'.join(_julia_ver.split('.')[:2])
-
-sanity_check_commands = [
-    """julia -e 'using Pkg; Pkg.activate("%s"); Pkg.test("%%(name)s")'""" % _julia_env,
-]
-
 moduleclass = 'lib'

easybuild/easyconfigs/i/IJulia/IJulia-1.23.3-Julia-1.6.7.eb

@@ -11,7 +11,7 @@ description = "Julia kernel for Jupyter"
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, SYSTEM),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
@@ -65,6 +65,7 @@ exts_list = [
         'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'],
         'checksums': ['1471ed94093efd24bae5e6ff1d3f7fa61901bf8834a737eeae2a9e620f50f07c'],
         'preinstallopts': "mkdir -p %(installdir)s/jupyter && export JUPYTER_DATA_DIR=%(installdir)s/jupyter && ",
+        'runtest': True,
     }),
 ]
 

easybuild/easyconfigs/i/IJulia/IJulia-1.24.0-Julia-1.8.5.eb

@@ -11,7 +11,7 @@ description = "Julia kernel for Jupyter"
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, SYSTEM),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
@@ -70,6 +70,7 @@ exts_list = [
         'preinstallopts': "mkdir -p %(installdir)s/jupyter && export JUPYTER_DATA_DIR=%(installdir)s/jupyter && ",
         'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'],
         'checksums': ['85b3ee48aee1688bcb89b8fb93c332551e3a75cfc7d17bb346daed36dedc358e'],
+        'runtest': True,
     }),
 ]
 

easybuild/easyconfigs/i/IJulia/IJulia-1.24.2-Julia-1.10.3.eb

@@ -11,7 +11,7 @@ description = "Julia kernel for Jupyter"
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, SYSTEM),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
@@ -74,6 +74,7 @@ exts_list = [
         'preinstallopts': "mkdir -p %(installdir)s/jupyter && export JUPYTER_DATA_DIR=%(installdir)s/jupyter && ",
         'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'],
         'checksums': ['de215348c7c41e1ca15c0d21f5f9a78bedce77b02ef89d67f38702c4d57ee80d'],
+        'runtest': True,
     }),
 ]
 

easybuild/easyconfigs/i/IJulia/IJulia-1.29.0-Julia-1.11.6.eb

@@ -11,10 +11,21 @@ description = "Julia kernel for Jupyter"
 toolchain = SYSTEM
 
 dependencies = [
-    ('Julia', _julia_ver, '-linux-%s' % ARCH, SYSTEM),
+    ('Julia', _julia_ver),
 ]
 
 exts_list = [
+    ('Compat', '4.18.1', {
+        'is_test_dependency': True,
+        'source_urls': ['https://github.com/JuliaLang/Compat.jl/archive/'],
+        'checksums': ['b080c5ce04d01aafd90c493aacbe33e9b1961e71ee7772197f56a28242770cd1'],
+    }),
+    ('Aqua', '0.8.14', {
+        'is_test_dependency': True,
+        'source_urls': ['https://github.com/JuliaTesting/Aqua.jl/archive/'],
+        'checksums': ['706aba02c63f9f0e87d6b0852628d15c16ca7de597cc25a4420e277c7176ce4f'],
+    }),
+
     ('Preferences', '1.4.3', {
         'source_urls': ['https://github.com/JuliaPackaging/Preferences.jl/archive/'],
         'checksums': ['02b995891818b91266f98bcb46eefc513dfb66b177b5a6a0d1cff97be3e4582d'],
@@ -67,7 +78,9 @@ exts_list = [
     }),
     (name, version, {
         'preinstallopts': "mkdir -p %(installdir)s/jupyter && export JUPYTER_DATA_DIR=%(installdir)s/jupyter && ",
+        'runtest': True,
         'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'],
+        'test_online': True,
         'checksums': ['2d97b9fda7c5d05a3c7ea0ff65c58d9fc3ace1c14b136154e083b4e5df29171a'],
     }),
 ]

easybuild/easyconfigs/j/Julia/Julia-1.10.3.eb

@@ -0,0 +1,23 @@
+name = 'Julia'
+version = '1.10.3'
+
+homepage = 'https://julialang.org'
+description = "Julia is a high-level, high-performance dynamic programming language for numerical computing"
+
+toolchain = SYSTEM
+
+source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/',
+               'https://julialang-s3.julialang.org/bin/linux/%(arch)s/%(version_major_minor)s/']
+sources = ['%(namelower)s-%(version)s-linux-%(arch)s.tar.gz']
+checksums = [
+    {
+        'julia-1.10.3-linux-x86_64.tar.gz':
+            '81b910c922fff0e27ae1f256f2cc803db81f3960215281eddd2d484721928c70',
+        # 'julia-1.10.3-linux-aarch64.tar.gz':
+        #     None,
+        # 'julia-1.10.3-linux-ppc64le.tar.gz':
+        #     None,
+    }
+]
+
+moduleclass = 'lang'

easybuild/easyconfigs/j/Julia/Julia-1.10.5.eb

@@ -0,0 +1,23 @@
+name = 'Julia'
+version = '1.10.5'
+
+homepage = 'https://julialang.org'
+description = "Julia is a high-level, high-performance dynamic programming language for numerical computing"
+
+toolchain = SYSTEM
+
+source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/',
+               'https://julialang-s3.julialang.org/bin/linux/%(arch)s/%(version_major_minor)s/']
+sources = ['%(namelower)s-%(version)s-linux-%(arch)s.tar.gz']
+checksums = [
+    {
+        'julia-1.10.5-linux-x86_64.tar.gz':
+            '33497b93cf9dd65e8431024fd1db19cbfbe30bd796775a59d53e2df9a8de6dc0',
+        # 'julia-1.10.5-linux-aarch64.tar.gz':
+        #     None,
+        # 'julia-1.10.5-linux-ppc64le.tar.gz':
+        #     None,
+    }
+]
+
+moduleclass = 'lang'

easybuild/easyconfigs/j/Julia/Julia-1.11.3.eb

@@ -0,0 +1,23 @@
+name = 'Julia'
+version = '1.11.3'
+
+homepage = 'https://julialang.org'
+description = "Julia is a high-level, high-performance dynamic programming language for numerical computing"
+
+toolchain = SYSTEM
+
+source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/',
+               'https://julialang-s3.julialang.org/bin/linux/%(arch)s/%(version_major_minor)s/']
+sources = ['%(namelower)s-%(version)s-linux-%(arch)s.tar.gz']
+checksums = [
+    {
+        'julia-1.11.3-linux-x86_64.tar.gz':
+            '7d48da416c8cb45582a1285d60127ee31ef7092ded3ec594a9f2cf58431c07fd',
+        # 'julia-1.11.5-linux-aarch64.tar.gz':
+        #     'f63203574fba25c9bda5e98b2f87f985d4672109855633a46bae32bfba3cbc0d',
+        # 'julia-1.11.5-linux-ppc64le.tar.gz':
+        #     '11ae7f0b83663de35d9a30e916373378f7985424c030a4a5af96aecc9b6eaa66',
+    }
+]
+
+moduleclass = 'lang'

easybuild/easyconfigs/j/Julia/Julia-1.11.5.eb

@@ -1,5 +1,3 @@
-easyblock = 'Tarball'
-
 name = 'Julia'
 version = '1.11.5'
 
@@ -11,7 +9,6 @@ toolchain = SYSTEM
 source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/',
                'https://julialang-s3.julialang.org/bin/linux/%(arch)s/%(version_major_minor)s/']
 sources = ['%(namelower)s-%(version)s-linux-%(arch)s.tar.gz']
-patches = [('julia.wrapper', 'bin/')]
 checksums = [
     {
         'julia-1.11.5-linux-x86_64.tar.gz':
@@ -20,20 +17,7 @@ checksums = [
             'f63203574fba25c9bda5e98b2f87f985d4672109855633a46bae32bfba3cbc0d',
         'julia-1.11.5-linux-ppc64le.tar.gz':
             '11ae7f0b83663de35d9a30e916373378f7985424c030a4a5af96aecc9b6eaa66',
-    },
-    {
-        'julia.wrapper':
-            'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d',
-    },
+    }
 ]
 
-# install wrapper with linking safeguards for Julia libraries
-postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]
-
-sanity_check_paths = {
-    'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
-    'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
-}
-sanity_check_commands = ['julia --help']
-
 moduleclass = 'lang'