col-bwt/CMakeLists.txt at main · drnatebrown/col-bwt · GitHub

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# -----------------------------------------------------------------------------
# @brief  : Root cmake file.
# @author : Enrico Fraccaroli
# @create : 23/03/2021
# @update : 23/03/2021
# -----------------------------------------------------------------------------

# -----------------------------------------------------------------------------
# Set the minimum CMake version, the project name and default build type.
# -----------------------------------------------------------------------------
cmake_minimum_required(VERSION 3.16)

# Set the project name.
project(bwt_frag)

# Set the default build type to Release.
if(NOT CMAKE_BUILD_TYPE)
  message(STATUS "Setting build type to 'Release' as none was specified.")
  set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build." FORCE)
endif()

find_package(Git)
if(GIT_FOUND)
    message("git found: ${GIT_EXECUTABLE}")
else()
    message(WARNING "git not found. Cloning of submodules will not work.")
endif()

# -----------------------------------------------------------------------------
# Set the compilation flags.
# -----------------------------------------------------------------------------
# Set C++ Standard.
set(CMAKE_CXX_STANDARD 17)

# Set the actual flags.
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall")
#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Werror")
#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pedantic")
#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pedantic-errors")

if (CMAKE_BUILD_TYPE STREQUAL "Debug")

    message(STATUS "Disabling optimizations; Debug Mode Enabled.")
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g3")
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -ggdb")
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O0")

elseif (CMAKE_BUILD_TYPE STREQUAL "Release")

    message(STATUS "Enabling optimizations.")
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3")

endif (CMAKE_BUILD_TYPE STREQUAL "Debug")

# -----------------------------------------------------------------------------
# Inlcude header directories and set the library.
# -----------------------------------------------------------------------------
add_subdirectory(thirdparty)

# -----------------------------------------------------------------------------
# Add tests.
# -----------------------------------------------------------------------------
# CMake has support for adding tests to a project:
enable_testing()
add_subdirectory(include)
add_subdirectory(src)

configure_file(${PROJECT_SOURCE_DIR}/scripts/col-bwt.py ${PROJECT_BINARY_DIR}/col-bwt COPYONLY)
execute_process(COMMAND chmod u+x ${PROJECT_BINARY_DIR}/col-bwt)