Bump actions/setup-python from 6 to 7

.github/workflows/dependabot.yml

@@ -25,7 +25,7 @@ jobs:
       - name: Fetch tags
         run: git fetch --all --tags
       - name: Python setup
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v7
         with:
           python-version: "3.11"
       - name: Install the latest version of uv

.github/workflows/publish-docs.yml

@@ -20,7 +20,7 @@ jobs:
         uses: actions/checkout@v7
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v6
+      - uses: actions/setup-python@v7
         with:
           python-version: "3.11"
       - name: Install the latest version of uv

.github/workflows/publish-pypi.yml

@@ -20,7 +20,7 @@ jobs:
         with:
           fetch-depth: 0
       - name: Python setup
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v7
         with:
           python-version: "3.11"
       - name: Install the latest version of uv

.github/workflows/run-tests.yml

@@ -18,7 +18,7 @@ jobs:
       # checks out the repo
       - uses: actions/checkout@v7
       - name: Python setup
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v7
         with:
           python-version: "3.11"
       - name: Install the latest version of uv
@@ -41,7 +41,7 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v7
       - name: Python setup
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v7
         with:
           python-version: ${{ matrix.python_version }}
       - name: Install the latest version of uv

.pre-commit-config.yaml

@@ -15,11 +15,11 @@ repos:
     -   id: check-yaml
     -   id: detect-private-key
 -   repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "v2.25.1"
+    rev: "v2.26.0"
     hooks:
     -   id: pyproject-fmt
 -   repo: https://github.com/codespell-project/codespell
-    rev: v2.4.2
+    rev: v2.4.3
     hooks:
     -   id: codespell
         exclude: |
@@ -50,7 +50,7 @@ repos:
     hooks:
     -   id: actionlint
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.15.20"
+    rev: "v0.16.1"
     hooks:
     -   id: ruff-format
     -   id: ruff-check

src/cytodataframe/frame.py

@@ -112,7 +112,7 @@ class CytoDataFrame(pd.DataFrame):
     # while avoiding oversized outputs in typical Jupyter viewports.
     _DEFAULT_TABLE_MAX_HEIGHT: ClassVar[str] = "700px"
 
-    def __init__(  # noqa: PLR0913
+    def __init__(  # noqa: PLR0913, PLR0917
         self: CytoDataFrame_type,
         data: Union[CytoDataFrame_type, pd.DataFrame, str, pathlib.Path],
         data_context_dir: Optional[str] = None,
@@ -840,7 +840,7 @@ def _slider_relative_position(value: float, slider_domain: np.ndarray) -> float:
         return position
 
     @staticmethod
-    def _build_filter_distribution_html(  # noqa: C901, PLR0912, PLR0913, PLR0915
+    def _build_filter_distribution_html(  # noqa: C901, PLR0912, PLR0913, PLR0915, PLR0917
         values: pd.Series,
         selected_range: Tuple[float, float],
         threshold_x: Optional[float] = None,
@@ -2035,7 +2035,7 @@ def find_image_path_columns(
             and str(col).replace("FileName", "PathName") in all_cols
         }
 
-    def search_for_mask_or_outline(  # noqa: PLR0913, PLR0911, C901
+    def search_for_mask_or_outline(  # noqa: PLR0913, PLR0911, PLR0917, C901
         self: CytoDataFrame_type,
         data_value: str,
         pattern_map: dict,
@@ -2644,7 +2644,7 @@ def _load_enhanced_image_for_display(  # noqa: C901
 
         return orig_image_array
 
-    def _prepare_cropped_image_layers(  # noqa: C901, PLR0915, PLR0912, PLR0913
+    def _prepare_cropped_image_layers(  # noqa: C901, PLR0915, PLR0912, PLR0913, PLR0917
         self: CytoDataFrame_type,
         data_value: Any,
         bounding_box: Tuple[int, int, int, int],
@@ -3630,7 +3630,7 @@ def _find_3d_columns_for_display(
 
         return columns_3d
 
-    def _add_label_overlay_to_plotter(  # noqa: PLR0913
+    def _add_label_overlay_to_plotter(  # noqa: PLR0913, PLR0917
         self: CytoDataFrame_type,
         plotter: Any,
         volume: np.ndarray,
@@ -3969,7 +3969,7 @@ def _toggle_overlay_actors_visibility(
         with contextlib.suppress(Exception):
             plotter.render()
 
-    def _build_pyvista_viewer(  # noqa: C901, PLR0912, PLR0913, PLR0915
+    def _build_pyvista_viewer(  # noqa: C901, PLR0912, PLR0913, PLR0915, PLR0917
         self: CytoDataFrame_type,
         volume: np.ndarray,
         backend: str,

src/cytodataframe/volume.py

@@ -82,7 +82,7 @@ def _resolve_vtk_js_url(display_options: Optional[dict]) -> str:
     return str(configured) if configured else VTK_JS_CDN_URL
 
 
-def build_3d_image_html_view(  # noqa: C901, PLR0912, PLR0913, PLR0915
+def build_3d_image_html_view(  # noqa: C901, PLR0912, PLR0913, PLR0915, PLR0917
     volume: np.ndarray,
     dims: Tuple[int, int, int],
     data_value: str,
@@ -443,7 +443,7 @@ def extract_volume_from_ome_arrow(  # noqa: C901, PLR0912
         return None
 
 
-def build_3d_html_from_path(  # noqa: PLR0913
+def build_3d_html_from_path(  # noqa: PLR0913, PLR0917
     data_value: str,
     candidate_path: pathlib.Path,
     display_options: Optional[dict],

tests/test_frame.py

@@ -530,7 +530,7 @@ def test_find_matching_segmentation_path_prefers_candidate_parent_tree(
     assert matched.parent.name == "plate_a"
 
 
-def test_cytodataframe_input(
+def test_cytodataframe_input(  # noqa: PLR0917
     tmp_path: pathlib.Path,
     basic_outlier_dataframe: pd.DataFrame,
     basic_outlier_csv: str,