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gatk: correct license and add zlib-ng-compat on Linux #2340

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gatk: correct license and add zlib-ng-compat on Linux #2340

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64e12e7
gatk: correct license to Apache-2.0
BenjaminDEMAILLE Aug 22, 2026
c1f4116
gatk: add zlib-ng-compat dependency on Linux
BenjaminDEMAILLE Aug 22, 2026
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7 changes: 6 additions & 1 deletion Formula/gatk.rb
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
class Gatk < Formula
include Language::Python::Virtualenv

Expand All @@ -6,7 +6,7 @@
homepage "https://github.com/broadinstitute/gatk"
url "https://github.com/broadinstitute/gatk/releases/download/4.6.2.0/gatk-4.6.2.0.zip"
sha256 "32d2f90bf13fcb3a8ac765bb2cb8ec1fc9a6cc447055d0156bd1db2092d4e3e8"
license "BSD-3-Clause"
license "Apache-2.0"

livecheck do
url :stable
Expand All @@ -28,6 +28,11 @@
depends_on "python@3.10"
depends_on "r"

on_linux do
# Picked up by the Python wheels installed below.
depends_on "zlib-ng-compat"
end

resource "homebrew-count_reads.bam" do
url "https://github.com/broadinstitute/gatk/blob/626c88732c02b0fd5f395db20c91bf2784ec54b9/src/test/resources/org/broadinstitute/hellbender/tools/count_reads.bam?raw=true"
sha256 "656e36331a39a3641565ef7810a529ac51270b4132007d7b94e6efff99133a2c"
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