sortmerna 6.0.2 - #2300

Process completed with exit code 1.

install failed

The homepage URL https://bioinfo.lifl.fr/RNA/sortmerna/ is not reachable (HTTP status code 404)

1 problem in 1 formula detected.

/usr/bin/ld: /home/linuxbrew/.linuxbrew/opt/rocksdb/lib/librocksdb.a(compression_context_cache.cc.o): in function `rocksdb::CompressionContextCache::CompressionContextCache() [clone .cold]': compression_context_cache.cc:(.text.unlikely+0x58): undefined reference to `ZSTD_freeDCtx' /usr/bin/ld: /home/linuxbrew/.linuxbrew/opt/rocksdb/lib/librocksdb.a(compression_context_cache.cc.o): in function `rocksdb::CompressionContextCache::GetCachedZSTDUncompressData() [clone .cold]': compression_context_cache.cc:(.text.unlikely+0x8f): undefined reference to `ZSTD_freeDCtx' /usr/bin/ld: warning: creating DT_TEXTREL in a PIE collect2: error: ld returned 1 exit status /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/shims/linux/super/bin/g++ -W -Wextra -Wall -Xlinker -v -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/sortmerna.dir/link.d CMakeFiles/sortmerna.dir/main.cpp.o CMakeFiles/smr_objs.dir/alignment.cpp.o CMakeFiles/smr_objs.dir/bitvector.cpp.o CMakeFiles/smr_objs.dir/cmd.cpp.o CMakeFiles/smr_objs.dir/izlib.cpp.o CMakeFiles/smr_objs.dir/index.cpp.o CMakeFiles/smr_objs.dir/indexdb.cpp.o CMakeFiles/smr_objs.dir/kseq_load.cpp.o CMakeFiles/smr_objs.dir/kvdb.cpp.o CMakeFiles/smr_objs.dir/options.cpp.o CMakeFiles/smr_objs.dir/output.cpp.o CMakeFiles/smr_objs.dir/summary.cpp.o CMakeFiles/smr_objs.dir/paralleltraversal.cpp.o CMakeFiles/smr_objs.dir/processor.cpp.o CMakeFiles/smr_objs.dir/read.cpp.o CMakeFiles/smr_objs.dir/readfeed.cpp.o CMakeFiles/smr_objs.dir/readstats.cpp.o CMakeFiles/smr_objs.dir/references.cpp.o CMakeFiles/smr_objs.dir/refstats.cpp.o CMakeFiles/smr_objs.dir/traverse_bursttrie.cpp.o CMakeFiles/smr_objs.dir/util.cpp.o CMakeFiles/smr_objs.dir/otumap.cpp.o CMakeFiles/smr_objs.dir/report.cpp.o CMakeFiles/smr_objs.dir/report_fx_base.cpp.o CMakeFiles/smr_objs.dir/report_fastx.cpp.o CMakeFiles/smr_objs.dir/report_fx_other.cpp.o CMakeFiles/smr_objs.dir/report_blast.cpp.o CMakeFiles/smr_objs.dir/report_denovo.cpp.o CMakeFiles/smr_objs.dir/report_biom.cpp.o CMakeFiles/smr_objs.dir/report_sam.cpp.o -o sortmerna -Wl,-rpath,/home/linuxbrew/.linuxbrew/opt/parasail/lib: ../../libbuild_version.a ../../3rdparty/alp/libalp.a /home/linuxbrew/.linuxbrew/opt/rocksdb/lib/librocksdb.a -ldl /home/linuxbrew/.linuxbrew/opt/zlib/lib/libz.so /home/linuxbrew/.linuxbrew/opt/zlib/lib/libz.so ../../indexed_bzip2_src/libzlibstatic.a /home/linuxbrew/.linuxbrew/opt/parasail/lib/libparasail.so make[2]: *** [src/sortmerna/CMakeFiles/sortmerna.dir/build.make:169: src/sortmerna/sortmerna] Error 1 make[2]: Leaving directory '/var/tmp/sortmerna-20260711-2-puvzby/sortmerna-6.0.2/build' make[1]: *** [CMakeFiles/Makefile2:483: src/sortmerna/CMakeFiles/sortmerna.dir/all] Error 2 make[1]: Leaving directory '/var/tmp/sortmerna-20260711-2-puvzby/sortmerna-6.0.2/build' make: *** [Makefile:159: all] Error 2 ==> Formula Tap: brewsci/bio Path: /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/sortmerna.rb ==> Configuration HOMEBREW_VERSION: 6.0.9-112-g34c40c1 ORIGIN: https://github.com/Homebrew/brew HEAD: 34c40c18ffa2029b611b61c73273e32c003d0842 Last commit: 6 hours ago Branch: main Core tap: N/A HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew HOMEBREW_CACHE: /home/runner/.cache/Homebrew HOMEBREW_CASK_OPTS: [] HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS: 3650 HOMEBREW_COLOR: set HOMEBREW_CURL_PATH: /usr/bin/curl HOMEBREW_DOWNLOAD_CONCURRENCY: 8 HOMEBREW_FAIL_LOG_LINES: 150 HOMEBREW_FORBID_PACKAGES_FROM_PATHS: set HOMEBREW_FORCE_VENDOR_RUBY: set HOMEBREW_GITHUB_API_TOKEN: set HOMEBREW_GIT_EMAIL: 1589480+BrewTestBot@users.noreply.github.com HOMEBREW_GIT_NAME: BrewTestBot HOMEBREW_GIT_PATH: /usr/bin/git HOMEBREW_LOGS: /home/runner/work/homebrew-bio/homebrew-bio/logs HOMEBREW_MAKE_JOBS: 4 HOMEBREW_NO_ANALYTICS: set HOMEBREW_NO_AUTO_UPDATE: set HOMEBREW_NO_EMOJI: set HOMEBREW_NO_ENV_HINTS: set HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set HOMEBREW_NO_INSTALL_CLEANUP: set HOMEBREW_REQUIRE_TAP_TRUST: set HOMEBREW_SORBET_RUNTIME: set Homebrew Ruby: 4.0.5 => /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/4.0.5_1/bin/r

brewsci/bio/sortmerna 6.0.2 did not build

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Adding `rocksdb` adds 8 new recursive dependencies on x86_64_linux (73.3MB, plus 2 unknown sizes).

Adding `parasail` adds 1 new recursive dependency on x86_64_linux (62.6MB).