Issues

• [Bug] set_api_key()'s api_key: str annotation is the same None mismatch as #306, one level up

  biocypher/biochatter#339 · Filter by author AmirF194 opened on Aug 22, 2026

• Benchmarking Large Language Models for Patient-Facing Communication on Adverse Reactions and Contraindications of Medications

  biocypher/biochatter#333 · Filter by author johann-UMR opened on Jun 11, 2026
  4

• Add CSV/TSV support with row-aware chunking

  enhancement
  Feature

  biocypher/biochatter#331 · Filter by author peymanvahidi opened on Apr 8, 2026
  1

• [Model request] GPT-5

  model request
  biocypher/biochatter#319 · Filter by author slobentanzer opened on Aug 19, 2025

• [Model request] Nvidia Nemotron

  model request
  biocypher/biochatter#318 · Filter by author slobentanzer opened on Aug 19, 2025

• Optimize System/tool directed queries with response from custom RAGs rather than underlying models

  documentationenhancement
  biocypher/biochatter#314 · Filter by author nivemaham opened on Jun 19, 2025
  2

• [Bug] LiteLLMConversation unused exception

  bug
  biocypher/biochatter#306 · Filter by author slobentanzer opened on Jun 10, 2025
  2

• Adapt BioChatter-light to Gemini

  biocypher/biochatter#283 · Filter by author fcarli opened on Apr 23, 2025
  2

  

• Implement "safe streamlit spinner"

  biocypher/biochatter#279 · Filter by author slobentanzer opened on Mar 11, 2025
  4

  

• Define scope of agentic system(s)

  biocypher/biochatter#289 · Filter by author slobentanzer opened on Mar 7, 2025
  

• Develop dedicated benchmark and monitoring for business questions

  biocypher/biochatter#288 · Filter by author slobentanzer opened on Mar 7, 2025
  1

  

• LangGraph-type chaining of models to answer business questions

  biocypher/biochatter#284 · Filter by author slobentanzer opened on Mar 7, 2025
  2

  

• Prototype agentic system for Open Targets

  biocypher/biochatter#286 · Filter by author slobentanzer opened on Mar 7, 2025
  

• Consider externalising the benchmark

  biocypher/biochatter#287 · Filter by author slobentanzer opened on Mar 7, 2025
  

• Improve prompt templating modularisation

  biocypher/biochatter#281 · Filter by author slobentanzer opened on Mar 7, 2025
  

• BioChatter initial refactoring

  biocypher/biochatter#285 · Filter by author slobentanzer opened on Mar 7, 2025
  

• Temperature always set to zero

  question
  biocypher/biochatter#277 · Filter by author fcarli opened on Mar 5, 2025
  1

• Diffusion LLMs

  model request
  biocypher/biochatter#274 · Filter by author slobentanzer opened on Feb 27, 2025

• [Model request] DeepSeek benchmark

  model request
  biocypher/biochatter#265 · Filter by author Zeno-kimono opened on Jan 23, 2025
  1

• Add liteLLM for LLM requests

  enhancement
  biocypher/biochatter#264 · Filter by author slobentanzer opened on Jan 16, 2025
  3

  

• Project management: Automated curation of issues and milestones

  biocypher/biochatter#260 · Filter by author slobentanzer opened on Jan 3, 2025 · Semi-automated curation

• Find a generic way to let a tool using LLM agent know which module a function is from

  biocypher/biochatter#258 · Filter by author mengerj opened on Dec 13, 2024

• Conversation class typing in API agent module is confusing

  biocypher/biochatter#252 · Filter by author slobentanzer opened on Dec 12, 2024

• Develop benchmarking test cases for Tools tl Module

  biocypher/biochatter#251 · Filter by author bastienchassagnol opened on Dec 12, 2024

• Develop benchmarking test cases for AnnData IO Operations

  biocypher/biochatter#250 · Filter by author anisdismail opened on Dec 12, 2024
  1