Labels

Pull requests that update a dependency file

A duplicate issue

Pull requests that update python:uv code

Unresolved work retained for reference; closed at maintainer request.

scRNA-seq dataset prepared using 10X Genomics kit (or similar) with TCR/BCR

scRNA-seq dataset prepared using 10X Genomics kit (or similar) + UMI-tagged MHC-multimers

Negative data on TCRs and epitopes they don't recognize

High-throughput TCR synthesis + screening

VDJdb aggregation, compilation and proofreading infrastructure development

VDJdb summary report generation infrastructure development

Critical issues requiring complex maintenance works

Inferred (directly or indirectly) antigen receptor:condition associations.

Dataset sent by internal or external collaborators

A dataset of antigen receptors and cognate antigens, e.g. publicly available 10X+Immudex assay data

Typos and errors that need to be fixed in one or multiple VDJdb records

A paper listing several studies and datasets that can be imported into VDJdb

Antigen specificity information present in public databases, e.g. genbank or PDB

A published study listing TCRs and cognate antigens with PubMed ID

A placeholder for paper yet to be published that will be incorporated into VDJdb

A study listing TCRs and cognate antigens available on arxiv/biorxiv

Required primary manuscript or source table is unavailable for the remaining review.

Interop with structural data

Minor typos to fix

Positive and negative validation of TCR specificity records

Not planned; audit records the reason and any condition for reconsideration.