Issues

• 📋 Documentation Enhancement Suggestion

  agemagician/ProtTrans#168 · Filter by author croviatrust opened on Mar 17, 2026

• Which release of UniRef100 and BFD were used to train ProtBert?

  agemagician/ProtTrans#167 · Filter by author alber1723 opened on Jul 21, 2025
  1

• content not found

  agemagician/ProtTrans#165 · Filter by author DrAzouzMaroua opened on May 3, 2025
  1

• ProtT5 model training loss function

  agemagician/ProtTrans#164 · Filter by author Alex2975 opened on Dec 11, 2024
  7

• Generate embedding for unnatural amino acid

  agemagician/ProtTrans#162 · Filter by author Frank-LIU-520 opened on Dec 5, 2024
  1

• Training for better embedding using self-supervised fashion with masked language modeling (MLM) for my own dataset

  agemagician/ProtTrans#161 · Filter by author Frank-LIU-520 opened on Dec 5, 2024
  2

• Fine-tuning for antibody dataset

  agemagician/ProtTrans#160 · Filter by author Frank-LIU-520 opened on Dec 5, 2024
  2

• link for downloading ProtElektra does not work

  agemagician/ProtTrans#159 · Filter by author aryankeluskar opened on Nov 11, 2024
  1

• T5 fine-tuning special tokens

  agemagician/ProtTrans#158 · Filter by author tombosc opened on Nov 1, 2024
  3

• Missing example_seqs.fasta file in the Colab example

  agemagician/ProtTrans#157 · Filter by author zt20001126 opened on Sep 27, 2024
  3

• Prediction meanings

  agemagician/ProtTrans#156 · Filter by author lhkhiem28 opened on Sep 11, 2024
  1

• PT5_LoRA_Finetuning_per_prot.ipynb - memory accumulation during validation

  agemagician/ProtTrans#153 · Filter by author Fredditeddy opened on Jul 4, 2024
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• IndexError in generate protein notebook

  agemagician/ProtTrans#152 · Filter by author ekiefl opened on Jun 14, 2024
  3

• What was the pretraining split for the ProtT5-UniRef50 model?

  agemagician/ProtTrans#151 · Filter by author speydril opened on Jun 12, 2024
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• ProtT5 model generate

  agemagician/ProtTrans#147 · Filter by author BSharmi opened on Mar 29, 2024
  2

• Generating embedding from finetuned model

  agemagician/ProtTrans#146 · Filter by author abelavit opened on Mar 25, 2024
  3

• (Question) Can I use this for protein homology to UniRef50?

  agemagician/ProtTrans#144 · Filter by author jolespin opened on Mar 2, 2024
  2

• Error in Generation of Embeddings from list of sequences via ProtT5

  agemagician/ProtTrans#134 · Filter by author amalislam675 opened on Nov 1, 2023
  5

• Speed up via xformers

  agemagician/ProtTrans#120 · Filter by author mortonjt opened on Jun 14, 2023
  6