All pull requests

Pull requests

• Creating prior_predict function

  #324·sschildhauer opened Sep 22, 2026Collaborator·

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  33

• Add draw_new_individual_params() helper (refs #302)

  #323·imelainew opened Sep 13, 2026Contributor·

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• Stabilize JAGS initialization in run_serodynamics() across decay models

  #322·kaiemjoy with CopilotAI opened Sep 10, 2026·

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• Adding ability to facet or color by stratification

  #310·sschildhauer opened Aug 31, 2026Collaborator·

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• Add serodynamics Stan model for Chapter 2 (Model 2a, Chapter1+α)

  #259·Kwan-Jenny opened Jun 27, 2026Collaborator·

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• Add Model 2a: same-parameter cross-biomarker covariance as a JAGS extension of model.jags (strictly nests Chapter 1) + Chapter-1 comparison

  #245·Kwan-Jenny opened Jun 13, 2026Collaborator·

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• Add IJE Software Application Profile manuscript draft

  no changelog
  #221·Kwan-Jenny opened May 19, 2026Collaborator·

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  33

• Add standalone documentation for sr_model class

  #195·sschildhauer with CopilotAI opened Apr 14, 2026·

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• Add RStan backend with multivariate observation model (Model B)

  #191·Kwan-Jenny with CopilotAI opened Mar 24, 2026·

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• Add stratified marginal curve overlay to plot_predicted_curve()

  #188·Kwan-Jenny with CopilotAI opened Jan 31, 2026·

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• Revise Chapter 2 documentation: fix notation conflicts and clarify model structure

  #187·Kwan-Jenny with CopilotAI opened Jan 31, 2026·

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• Refactor Run_Mod.R, improve Chapter2.qmd: extract helper, fix style, and address review comments

  #186·Kwan-Jenny with CopilotAI opened Jan 31, 2026·

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• Add assay-specific Y-axis labels to plot_predicted_curve()

  #182·Kwan-Jenny with CopilotAI opened Jan 23, 2026·

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• Remove placeholder text and standardize file naming

  #181·d-morrison with CopilotAI opened Jan 22, 2026·

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• Add residual-based posterior predictive diagnostics for individual-level fit evaluation

  #180·Kwan-Jenny with CopilotAI opened Jan 21, 2026·

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• Add prior predictive check utilities for Bayesian workflow validation

  #178·Kwan-Jenny with CopilotAI opened Jan 21, 2026·25 tasks done·

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• Add Stan support as alternative Bayesian modeling backend

  #175·d-morrison with CopilotAI opened Jan 9, 2026·57 tasks done·

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  202

  

• Add multi-version pkgdown documentation with version dropdown menu

  #173·d-morrison with CopilotAI opened Jan 9, 2026·14 tasks done·

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• Add chapter2.qmd: fake-data simulation and correlated model setup

  #133·Kwan-Jenny opened Sep 23, 2025Collaborator·

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  29

• Add Chapter 2 Documentation: Extending Hierarchical Model to Correlated Biomarkers

  #129·Kwan-Jenny opened Aug 13, 2025Collaborator·

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• Adding ability to run diagnostic functions on individuals

  #121·sschildhauer opened Jul 28, 2025Collaborator·

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• Creating a default print for sr_model

  #114·sschildhauer opened Jul 9, 2025Collaborator·

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• Run_mod data input documentation fix

  #105·sschildhauer opened Jul 5, 2025Collaborator·

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• Model description and upcoming additions

  #88·Kwan-Jenny opened Apr 15, 2025Collaborator·

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• Updating density diagnostic function

  #71·sschildhauer opened Mar 11, 2025Collaborator·

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  10