All pull requests

Pull requests

• Commit the derivation and script behind the backward-recurrence density comparison

  no version incrementno-changelog
  #688·d-morrison opened Sep 9, 2026Member·4 of 6 tasks·

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  14

• docs: document the density the C engine implements, restore the enteric fever inputs, and redirect pre-migration docs URLs

  #685·d-morrison opened Sep 8, 2026Member·5 of 6 tasks·

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  35

• Review and retire the methods-continued draft

  #666·d-morrison opened Aug 26, 2026Member·

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  7

• Replace deprecated xfun attribute getters with xfun::attr2()

  #644·kristinawlai with CopilotAI opened Aug 7, 2026·4 of 5 tasks·

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• Minor edits for paper submission

  #578·kristinawlai opened Jul 21, 2026Collaborator·

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  49

  

• Feature/minor edits paper

  #577·kristinawlai opened Jul 20, 2026Collaborator·

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  1

• not sure about intended scope; c.f. peter's version

  #555·d-morrison opened Jul 8, 2026Member·

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• Stabilize multi-way cluster-robust standard errors

  #545·kaiemjoy with CopilotAI opened Jun 26, 2026·1/2·

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  74

  

• [WIP] Fix issue with cluster-robust standard errors

  #544·Codex opened Jun 26, 2026AI·

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  6

  

• Add posterior predictive checks and residual diagnostics for model goodness of fit

  #541·kristinawlai with CopilotAI opened Jun 22, 2026·5 tasks done·

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• Add graph_downloads() function

  #518·d-morrison opened May 18, 2026Member·9 tasks done·

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  47

• fix(docs): cache R dependencies immediately after installing them

  #516·d-morrison with CopilotAI opened May 13, 2026·2 of 5 tasks·

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  20

  

• [WIP] Identify mixtools package usage in serocalculator

  #512·kristinawlai with CopilotAI opened Mar 27, 2026·

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• Use autoplot for curve params in methodology vignette

  #511·kristinawlai with CopilotAI opened Mar 26, 2026·5 tasks·

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  9

  

• CRAN release/v1.4.1 with coverage and snapshot stabilization

  #510·kristinawlai opened Mar 24, 2026Collaborator·5 tasks·

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  49

• Fix R oldrel-1 CI failure: replace ggpubr with patchwork + graceful internet error handling

  #508·kristinawlai with CopilotAI opened Mar 6, 2026·6 tasks·

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• Add alpha parameter to age_scatter for configurable point transparency

  #501·kaiemjoy with CopilotAI opened Jan 28, 2026·5 tasks done·

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• Update scrub typhus vignette with published citation and corrected analysis

  #499·CopilotAI opened Jan 28, 2026·3 tasks done·

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  23

  

• Add docx output format for pkgdown articles

  #497·d-morrison with CopilotAI opened Jan 28, 2026·4 of 5 tasks·

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  1

  

• Add compute_icc() for calculating intraclass correlation from clustered designs

  #492·kaiemjoy with CopilotAI opened Jan 21, 2026·4 tasks done·

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  4

  

• Fix CI workflows: linting, changelog, and documentation

  #489·d-morrison with CopilotAI opened Jan 21, 2026·3 tasks done·

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• Add optional metadata columns to summary objects with show_full_input parameter (default FALSE)

  #483·kaiemjoy with CopilotAI opened Jan 16, 2026·4 tasks done·

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• Create CRAN release for v1.4.0

  #466·kristinawlai opened Dec 11, 2025Collaborator·

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  2

• Feat/update ef vignette for paper

  #420·kristinawlai opened Mar 17, 2025Collaborator·

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  2

• Sample size em edits

  no changelog
  #369·d-morrison opened Feb 4, 2025Member·6 tasks·

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  27