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  1. geneformer_benchmarking geneformer_benchmarking Public

    Geneformer benchmarking for single-cell cell type classification from preprocessing to evaluation metrics and confusion-matrix analysis

    Jupyter Notebook

  2. Internship2024-Computational-Neuroscience-INI Internship2024-Computational-Neuroscience-INI Public

    Creating excitatory and inhibitory neural networks using NEST to study spatial navigation in hippocampus

    Jupyter Notebook

  3. mspepid-nfcore mspepid-nfcore Public

    Forked from nf-core/mspepid

    nf-core compliant mspepid pipeline for mass-spectrometry based peptide identification

    Nextflow

  4. scportrait-spatial-omics-qc scportrait-spatial-omics-qc Public

    Evaluation of scPortrait-generated subcellular features for quality assessment in Xenium and Atera spatial transcriptomics datasets.

    Jupyter Notebook