Add ChEBI web service converter - #183

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hechth with Copilot wants to merge 16 commits into

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copilot/add-new-chebi-service

Commits on Aug 25, 2026

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Copilot
authored
558a1b2
Add ChEBI web service converter

Copilot
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hechth
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e07a8fd
Use CHEBI:60888 as test entity in test_ChEBI.py

Copilot
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hechth
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5b2da6a
Fix ChEBI API endpoints and add name search test for 'bapta'

Copilot
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hechth
authored
5326dab
Fix ChEBI accession field mapping

Copilot
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hechth
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5abfa37
Fix ChEBI response parsing for current API

Copilot
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hechth
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d53ed44
Handle falsy ChEBI field values safely

Copilot
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hechth
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1ce8cde
Fix failing ChEBI tests: update INCHIKEY to match current ChEBI API data for CHEBI:60888

Copilot
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hechth
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493730f
Also URL-encode query parameters in ChEBI search methods

Copilot
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hechth
authored
a6d074c
Add INCHI/IUPAC name constants and iupac_name support to ChEBI converter and tests

Copilot
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hechth
authored
7e2bb0b

Commits on Aug 26, 2026

Fix ChEBI from_chebiid to supplement entity endpoint with es_search for iupac_name

Copilot
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hechth
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67be3d8
Only call es_search fallback in from_chebiid when iupac_name is missing

Copilot
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hechth
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e1d7674
Fix ChEBI iupac_name extraction: use names dict from entity endpoint, revert es_search fallback

Copilot
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hechth
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6aca29c
Skip falsy list elements in _get_first_value

Copilot
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hechth
authored
4983295
Use structure_search endpoint with similarity threshold=1 for SMILES lookups in ChEBI

Copilot
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hechth
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47ac1bf
Fix ChEBI structure_search API: use similarity parameter instead of threshold

Copilot
and
hechth
authored
58b6b6c