Removed the Osprey decoy b<->y intensity swap and expanded the regression to cover both decoy paths - #4480

Merged

brendanx67 merged 15 commits into

Skyline/work/20260726_osprey_regression_redesign

Jul 27, 2026

Commits on Jul 26, 2026

Added libdecoy+entrapment regression coverage and FDR spot checks

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eb44835
Removed the decoy b<->y intensity swap and added a fragment-overlap gate

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36ce01d
Simplified the decoy similarity gate for cross-impl parity

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32674f5
Set the Astral tilt bound against the fixed decoy construction

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f47f8a5
Re-recorded the Osprey regression goldens for the fixed decoy construction

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f3a1831

Commits on Jul 27, 2026

Enforced the library minimum peptide length on every load path

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5495bad
Fixed the decoy ladder to drop only ions spanning an unknown residue

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dc6c1cf
Addressed code review feedback on the Osprey regression harness

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378e7a5
Re-recorded the Astral golden for the corrected decoy ladder

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56afb67
Filled in the PR number in the golden data readme

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e2d7033
Reported a bad dataset table as a buildProblem instead of a stack trace

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af41f21
Addressed Copilot review feedback on PR #4480

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fa05592
Merge branch 'master' into Skyline/work/20260726_osprey_regression_redesign
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0d1f901
Applied the pairing manifest in the HPC merge node

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2b86784
Merge branch 'Skyline/work/20260726_osprey_regression_redesign' of github.com:ProteoWizard/pwiz into Skyline/work/20260726_osprey_regression_redesign
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10b4bac