Pna 2699 panels illustrative

[elhb]

just to illustrate how panels split into base addon etc would look like

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Note

Medium Risk
Removes several combined panel files and changes which panel names resolve in config; workflows or configs still pointing at deleted immuno-156-* or prerelease panels would break until they compose base + addon + hashing panels instead.

Overview
This PR restructures Proxiome PNA panel CSVs from monolithic “155 + extras” bundles into composable pieces tagged with panel_type (base, addon, sample_hashing).

Base immuno panels (proxiome-v1/v2-immuno-155) now declare panel_type: base. The v2.0 base panel drops embedded hashing rows (B2M/CD298/CD98 barcodes) that move into dedicated hashing panel files.

Addon marker panels are new small CSVs for FLAG, FMC63 (v1 and v2), and G4S (v2), each panel_type: addon, replacing deleted combined panels such as proxiome-*-immuno-156-FLAG/FMC63/G4S and v2 prerelease “everything in one file” variants.

Sample hashing is split out as proxiome-v2-hashing-prerelease and proxiome-v2-hashing-v2.0 (panel_type: sample_hashing); the old proxiome-v2-immuno-155-prerelease monolith is removed.

Tests in test_config.py are updated for the new panel inventory and the removed proxiome-v2-immuno-155-v1.0 alias case.

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Cursor Bugbot has reviewed your changes using high effort and found 1 potential issue.

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Hashing stripped from existing panel version

High Severity

proxiome-v2-immuno-155-v2.0 keeps the same name and version 2.0.0 after the 24 hashing rows move to proxiome-v2-hashing-v2.0, and its description still says it includes 3*8 hashing antibodies. Existing --panel proxiome-v2-immuno-155-v2.0 runs therefore drop sample-hashing markers with no load error.

Additional Locations (1)

• src/pixelator/pna/resources/panels/proxiome-v2-immuno-155-v2.0.csv#L165-L167

 

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