Mv enrichment plot - #45

Merged

enryH merged 51 commits into

mainfrom

mv_enrichment_plot

Aug 17, 2026

Commits on Jul 6, 2026

:truck: move core of enrichmentplot from viz to it's own module
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d4c77d8
:art: add explicit arguments
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54b6e3b
:art: cleanup module
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fdcbfaf
:art: format and re-order
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47506dc
🚧 add static version and build common preprocessing
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588e64a

Commits on Jul 20, 2026

🚧 start remodeling interface
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6293ca9
:art: rename function to get_enrichment_plot
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0dcb427
:format: format file
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6ae2ddf
:art: update plotly version to follow static version (one figure at a time)
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78c6878
:bug: update tests
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6047972
:art: rename scatter plot
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46c4aa8
:fire: remove now unused code
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0f8bcf9
:art: add type annotation of Schema
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aa60d85
:art: Rename functions. Each submodule has a get_enrichment_plot
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2f8de88
:wrench: add kwargs for future compatibily, but inform user when unused parameter are set
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26133cf
:art: make colormaps more robust to arbitrary group or comparison names
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bb6c1bc
:art: switch wording to upregulated in group x
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8e9caf4
🔧 let the comparison separator be a parameter
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d39beb2
:art: scale marker with p-value size, make it explicit in backend fcts
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fa1ec12
:truck: move testing of basic plots to own folder to reflect repo structure
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2618a1b
🚧 start adding a Claude.md
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4bfcae6
:truck: rename basic plot examples folder
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baa7410
:memo: keep track of acore specific functions
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5e33bea

Commits on Jul 21, 2026

:memo: document current API for enrichment plots
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8babffd
🔧 add acore for type cross-references
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105cfe5
:art: adapt headings and make sure plotly plots fit to page width
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d39619f
:art: play with left and right margin
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605d633
:art: play with plot margins
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1968e87
:bug: kaleido needs chrome, remove margin printing here
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48db508
:construction: check maximum pixels size of 799
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4fec1bb
:art: set width to 790 to avoid scroling
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4c2b433
:bug: correct spelling of manual
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1e4c4cf

Commits on Aug 12, 2026

Commits on Aug 13, 2026

:art: format
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4d43d64

Commits on Aug 14, 2026

fix typos, imports and paths

enryH
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Copilot
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5b81f3c
:art: add variation to pathway foreground set size (to debug)
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010de3c

Commits on Aug 15, 2026

:art: mention default DPI for static plots
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095ccb9
:art: use global markersize in case of several groups
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c508692
:bug: do not hard-code markersize in plotly enrichment plot to 14
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613df4a
:art: ensure same markersize in plots
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315b76f
:art: fix markersize in interactive plot in legend
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30d8ee4
:art: add markersize to general function
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0507642
:wrench: sync notebook
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c905fa3

Commits on Aug 16, 2026