Issues

• Same issue as prior experience: Annotators field becomes zero and never executes query #404

  KarchinLab/open-cravat#431 · Filter by author MarkWaltham opened on Sep 15, 2026
  1

• Subject: Re: Job stuck on "Submitted" status, Annotators showing 0 despite selecting 4

  KarchinLab/open-cravat#427 · Filter by author preciousdiamond474747 opened on Sep 10, 2026
  1

• hg38 mapper 1.47.2 does not contain chrM transcripts

  KarchinLab/open-cravat#426 · Filter by author EugeneEA opened on Aug 31, 2026

• Opencravat is not working JOB ID 260731-091018

  KarchinLab/open-cravat#416 · Filter by author Esha-web240 opened on Jul 31, 2026

• Open cravat is not working Job ID is 260731-092334

  KarchinLab/open-cravat#415 · Filter by author cinderella00633-hash opened on Jul 31, 2026
  3

• OpenCRAVAT Web version is not working JOB ID 260731-083405

  KarchinLab/open-cravat#413 · Filter by author cinderella00633-hash opened on Jul 31, 2026

• Variants Count Not Displayed for Job ID 260720-082816

  KarchinLab/open-cravat#412 · Filter by author Mahpara864 opened on Jul 20, 2026
  1

• Variants Count Not Displayed for Job ID 260720-082816

  KarchinLab/open-cravat#411 · Filter by author Mahpara864 opened on Jul 20, 2026

• [Question] a correct way to interact with GUI layouts and filters from CLI

  KarchinLab/open-cravat#406 · Filter by author wwoskie opened on Jun 2, 2026
  2

• The OpenCRAVAT store suggestions

  KarchinLab/open-cravat#391 · Filter by author bugds opened on Feb 4, 2026
  2

• Unscrollable side menu in the OpenCravat web app store

  KarchinLab/open-cravat#390 · Filter by author bugds opened on Feb 4, 2026
  1

• Missing gene annotations

  KarchinLab/open-cravat#388 · Filter by author MLabreck opened on Jan 30, 2026
  2

• OpenCravat web app store bug

  KarchinLab/open-cravat#387 · Filter by author bugds opened on Jan 28, 2026
  1

• Warning of deprecated package when using oc module commands

  KarchinLab/open-cravat#385 · Filter by author kescull opened on Jan 15, 2026
  1

• Local server installation (Ubuntu 24.04) fails to completely load user's jobs under GUI

  KarchinLab/open-cravat#384 · Filter by author clinicalngs opened on Jan 13, 2026
  3

• Gnomad4 annotator failing due to missing Tabix

  KarchinLab/open-cravat#383 · Filter by author Clare86 opened on Jan 6, 2026
  5

  

• gui: please allow --headless to be used with a result file

  KarchinLab/open-cravat#382 · Filter by author 0xaf1f opened on Dec 12, 2025
  2

• filehandle leak

  KarchinLab/open-cravat#379 · Filter by author cariaso opened on Nov 21, 2025

• Windows EXE to Update Cravat version to 2.13 does not update

  KarchinLab/open-cravat#378 · Filter by author sproekt5 opened on Nov 19, 2025
  1

  

• Failure in starting the annotation process for a hg19 VCF file

  KarchinLab/open-cravat#376 · Filter by author farshadf opened on Nov 3, 2025
  1

• Add "Last Updated" badge to annotator panels

  enhancementgood first issuehelp wanted
  Feature

  KarchinLab/open-cravat#373 · Filter by author kmoad opened on Oct 27, 2025

• Package a public dataset as an annotator and explore adding categorical value checkboxes

  enhancementgood first issuehelp wantedmodule
  Feature

  KarchinLab/open-cravat#372 · Filter by author jasminebro opened on Oct 27, 2025

• Add CI Badge to README

  enhancementgood first issuehelp wanted
  Feature

  KarchinLab/open-cravat#371 · Filter by author jasminebro opened on Oct 27, 2025
  2

  

• Add optional metadata field validation for modules

  good first issuehelp wanted
  Feature

  KarchinLab/open-cravat#370 · Filter by author jasminebro opened on Oct 26, 2025
  5

  

• Add format validation for module manifests

  good first issuehelp wanted
  Feature

  KarchinLab/open-cravat#369 · Filter by author jasminebro opened on Oct 26, 2025
  1