ctsm5.4.044: Merge b4bdev 20260605 - #4083

Merged

ekluzek merged 178 commits into

ESCOMP:masterfrom

ekluzek:merge-b4bdev-20260605

Jun 8, 2026

Commits on Apr 23, 2026

a test change
sy-li
committed
6d2bab6
Plant Respiration tech note edits
Katya Jay
committed
705e9a3

Commits on May 6, 2026

A few minor edits and various corrections e.g., link, equations. etc.
nmizukami
committed
673d808
equation reference syntax fixed
nmizukami
committed
046897f
Update first paragraph of bgc spinup section
slevis-lmwg
committed
6cbfd89
Plans for updating Figure 1.5.3 in the form of comments
slevis-lmwg
committed
1859920
Include the SASU step and figure placeholder
slevis-lmwg
committed
98c4396
Temporary fix to the figure failures; still need new figures though
slevis-lmwg
committed
d43537d
Add the new pSASU step and modify some existing relevant things
slevis-lmwg
committed
df9c784
Add placeholder for pSASU figure
slevis-lmwg
committed
b4d044f

Commits on May 7, 2026

Merge branch 'b4b-dev' into sec2_12_lake_edits
ekluzek
authored
9730ec7
Merge branch 'b4b-dev' into sec2_12_lake_edits
ekluzek
authored
23c2e12

Commits on May 8, 2026

Merge branch 'b4b-dev' into sec2_12_lake_edits
ekluzek
authored
7918cc5

Commits on May 11, 2026

Merge branch 'b4b-dev' into bgcspinups_sec1.5.7
slevis-lmwg
authored
92ca692

Commits on May 12, 2026

Updates to the bgc spinup section of the User's Guide
slevis-lmwg
committed
0098111

Commits on May 13, 2026

Commits on May 14, 2026

Commits on May 15, 2026

Correct a figure reference
slevis-lmwg
committed
2bc4a28
add new fates namelist switch for dbh init when nocomp is on
mvdebolskiy
committed
da0a557
add test for init_dbh
mvdebolskiy
committed
137fb39
update fates tag

glemieux
authored and
mvdebolskiy
committed
b16c753
update changelog for ctsm5.4.039

glemieux
authored and
mvdebolskiy
committed
57935a9
add bld namelist unit test for new option

glemieux
authored and
mvdebolskiy
committed
4ec34fd
update changelog with test results

glemieux
authored and
mvdebolskiy
committed
70118d0
Small ChangeLog corrections

slevis-lmwg
authored and
mvdebolskiy
committed
8b0a8d3
fix srcroot, remove parabuild include
mvdebolskiy
committed
2da7d05
remove double line
mvdebolskiy
committed
0daf650

Commits on May 18, 2026

Fix numbering sequence
olyson
committed
189baaf
Update the examples to ensure that they work smoothly
slevis-lmwg
committed
a3ecfbf

Commits on May 22, 2026

Merge tag 'ctsm5.4.041' into merge-master-b4bdev-20260521
samsrabin
committed
2aa905d
Merge pull request #4042 from samsrabin/merge-master-b4bdev-20260521
samsrabin
authored
bfa91b9
Merge branch 'b4b-dev' into docs-I4025-2-5-3-2-Fluxes
slevis-lmwg
authored
c216877
Merge pull request #4026 from olyson/docs-I4025-2-5-3-2-Fluxes
slevis-lmwg
authored
1ab2f6f
Updates to CLM50_Tech_Note_Fire.rst by Fang Li
slevis-lmwg
committed
8af62f3
Update the references section accordingly
slevis-lmwg
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a5ccd98
Make table and references updates consistent throughout
slevis-lmwg
committed
e6f950d
Clean two instances of trailing whitespace
slevis-lmwg
committed
f210adb
Merge branch 'b4b-dev' into fix-fates-paramgen-in-tests
mvdebolskiy
authored
b492702
fix changelog
mvdebolskiy
authored
ce3b42c
remove extra=
mvdebolskiy
authored
c4cec77
updates/fixes for chapter 2.18
Katya Jay
committed
0ea31ca
Update IMPORTANT_NOTES.md regarding fates_parteh_mode
slevis-lmwg
committed
2f16c38

Commits on May 23, 2026

review Snow Hydrology Sect 2.8
cenlinhe
committed
9426133

Commits on May 24, 2026

revert removed line, it wass not a dupplication
mvdebolskiy
committed
efd2fa0

Commits on May 26, 2026

Commits on May 27, 2026

Commits on May 28, 2026

Merge branch 'b4b-dev' into rm_sec_1.4.3.1_req_files
slevis-lmwg
authored
300c412
Merge pull request #4050 from slevis-lmwg/rm_sec_1.4.3.1_req_files
slevis-lmwg
authored
968b8f7
Make ch4 history accessible by field via the existing fincle approach
slevis-lmwg
committed
0da5af0
Merge pull request #4024 from mvdebolskiy/fix-fates-paramgen-in-tests
samsrabin
authored
668d32a
Merge branch 'b4b-dev' into simpler_ch4_history
slevis-lmwg
authored
cd92d3f
Merge branch 'b4b-dev' into bgcspinups_sec1.5.7
slevis-lmwg
authored
ba4816d
removed section 2.14.5 and IR to I
nmizukami
committed
84be7e0
Update doc/source/tech_note/Radiative_Fluxes/CLM50_Tech_Note_Radiative_Fluxes.rst

slevis-lmwg
and
wwieder
authored
ae18982
Merge branch 'b4b-dev' into section_2.4_radiative_fluxes
slevis-lmwg
authored
4a00557
add uuc equation
swensosc
committed
70d2c86
Merge pull request #3998 from slevis-lmwg/bgcspinups_sec1.5.7
slevis-lmwg
authored
1833e53
Merge branch 'b4b-dev' into section_2.4_radiative_fluxes
slevis-lmwg
authored
cd1a1a2
Merge branch 'b4b-dev' into tech_note_edits
slevis-lmwg
authored
c641af5
Merge pull request #3959 from katyarjay/tech_note_edits
slevis-lmwg
authored
1161e0e
Merge branch 'b4b-dev' into sec2_14_mosart_mod
slevis-lmwg
authored
9a84b92
Merge pull request #4054 from nmizukami/sec2_14_mosart_mod
slevis-lmwg
authored
c295b8a
Incorporate suggestions from code review from Keith

nmizukami
and
olyson
authored
594268c
Merge branch 'b4b-dev' into section_2.4_radiative_fluxes
slevis-lmwg
authored
c3998b3
Merge pull request #4052 from slevis-lmwg/section_2.4_radiative_fluxes
slevis-lmwg
authored
91584c0
Merge branch 'b4b-dev' into users_guide_fates_cn_opts
slevis-lmwg
authored
22c0b36
Merge pull request #4047 from slevis-lmwg/users_guide_fates_cn_opts
slevis-lmwg
authored
b02671f
more equation references
nmizukami
committed
3567d79
fixed numbering bullet points
nmizukami
committed
d54db1d
Update methane Technote documentation to mention hist_wrtch4diag flag
slevis-lmwg
committed
35e3c20
Merge branch 'b4b-dev' into simpler_ch4_history
slevis-lmwg
authored
43b596d

Commits on May 29, 2026

Merge branch 'master' into swenson_ctsm_docs
wwieder
authored
1d5bd7a
Merge pull request #4055 from slevis-lmwg/simpler_ch4_history
slevis-lmwg
authored
a88ce53
Update doc/source/tech_note/Fluxes/CLM50_Tech_Note_Fluxes.rst
slevis-lmwg
authored
7f3f2cc
Manually revert changes from master in order to merge this to b4b-dev
slevis-lmwg
committed
0fb7e1c
Merge branch 'b4b-dev' into swenson_ctsm_docs
slevis-lmwg
authored
ecf9e5e
Merge pull request #4057 from swensosc/swenson_ctsm_docs
slevis-lmwg
authored
391bfdd
Update submodules resolving #4066
ekluzek
committed
34b566b
Merge branch 'b4b-dev' into section_2.9_stom_resis_psn
slevis-lmwg
authored
a29d2cf
Insert beta_t in equations where it was missing
slevis-lmwg
committed
364be79
Mention that PHI_PSII = 1 - f_nps for consistency with the code
slevis-lmwg
committed
fed4dbc
Show that respiration is multiplied by beta_t (+ some cosmetic changes)
slevis-lmwg
committed
d65ff1b
Minor cosmetic changes
slevis-lmwg
committed
8242a7a
Merge branch 'b4b-dev' into alpha09c_submodule_update
ekluzek
authored
2267ba3
Parameter value updates in sections 2.9.1 to 2.9.3
slevis-lmwg
committed
138cfc7

Commits on May 30, 2026

Replace rounded with exact value for o2_molar_const
slevis-lmwg
committed
f31a119
Update some theta parameter values
slevis-lmwg
committed
2f64d0d

Commits on May 31, 2026

dmleung fixed some typos in the dust tech note. 30 May 2026
dmleung
committed
815a220

Commits on Jun 1, 2026

Update doc-builder to v3.2.0.
samsrabin
committed
57672c1
Update doc-builder to v3.2.1.
samsrabin
committed
a10d78c
Merge pull request #4071 from samsrabin/doc-builder-3.2.0
samsrabin
authored
2997bb0
Move pio back to pio2_6_8 so that the unit tests will work
ekluzek
committed
41fc839
Merge branch 'alpha09c_submodule_update' of github.com:ekluzek/CTSM into alpha09c_submodule_update
ekluzek
committed
f10b5df
Merge remote-tracking branch 'escomp/b4b-dev' into alpha09c_submodule_update
ekluzek
committed
de556d7
Back up cmeps version so that nvhpc will compile
ekluzek
committed
de01f6b

Commits on Jun 2, 2026

Commits on Jun 3, 2026

Add description of PFT-dependent r_mort and restructure and chapter
sy-li
committed
e7215c5
Merge branch 'b4b-dev' into alpha09c_submodule_update
ekluzek
authored
78e2ed2
Merge pull request #4067 from ekluzek/alpha09c_submodule_update
ekluzek
authored
8e6d277
Merge branch 'b4b-dev' into docs-I3723-2-5-3-1-RRTMGPfix
slevis-lmwg
authored
a51c2f9
Merge pull request #4074 from olyson/docs-I3723-2-5-3-1-RRTMGPfix
slevis-lmwg
authored
70fb5e6
Apply suggestion from @slevis-lmwg
slevis-lmwg
authored
6a5bf98
Remove Surface Albedo section from Lake Chapter
slevis-lmwg
committed
60d5dda
Merge branch 'b4b-dev' into sec2_12_lake_edits
slevis-lmwg
authored
3f2d6b7
Merge remote-tracking branch 'origin/sec2_12_lake_edits' into sec2_12_lake_edits
slevis-lmwg
committed
d19701a
Apply suggestion from @slevis-lmwg
slevis-lmwg
authored
ea613b8
Apply suggestion from @slevis-lmwg
slevis-lmwg
authored
4bb27d6
Merge pull request #3997 from nmizukami/sec2_12_lake_edits
slevis-lmwg
authored
1aa20f5
Apply suggestion from @slevis-lmwg
slevis-lmwg
authored
e49d4e3
Apply suggestion from @slevis-lmwg
slevis-lmwg
authored
08df744
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
ddd2053
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
4d9cc23
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
d9e4cc9
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
13a18e6
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
5d6f22b
Update doc/source/tech_note/Plant_Mortality/CLM50_Tech_Note_Plant_Mortality.rst
wwieder
authored
f1163e2
Apply suggestion from @wwieder
wwieder
authored
20d0d8e
Update doc/source/tech_note/References/CLM50_Tech_Note_References.rst
wwieder
authored
f645ab0
Merge branch 'b4b-dev' into edit_plant_mort
wwieder
authored
0e3e50d
Apply suggestion from @wwieder
wwieder
authored
116040e
Apply suggestion from @wwieder
wwieder
authored
f4190c1
Apply suggestion from @wwieder
wwieder
authored
0568ec5
Apply suggestion from @wwieder
wwieder
authored
09353b3
Apply suggestion from @wwieder
wwieder
authored
ec095fc
Apply suggestion from @wwieder
wwieder
authored
efc8527
Merge pull request #4075 from sy-li/edit_plant_mort
wwieder
authored
e33793b
Merge branch 'b4b-dev' into section_2.9_stom_resis_psn
slevis-lmwg
authored
1bca10d
Merge pull request #4053 from slevis-lmwg/section_2.9_stom_resis_psn
slevis-lmwg
authored
c1024c1

Commits on Jun 4, 2026

Commits on Jun 5, 2026

Commits on Jun 8, 2026

Fix build-namelist to ctsm5.4.042 version
ekluzek
committed
af68ca4
Update change files
ekluzek
committed
2ef0583
Remove bit about need to update permisions for baselines on Izumi
ekluzek
committed
c276793