Issues

• Singleton GlobalAppConfig to normal instance

  DKFZ-ODCF/sophia#21 · Filter by author vinjana opened on Feb 6, 2024

• Centralize hard-coded cutoffs

  DKFZ-ODCF/sophia#20 · Filter by author vinjana opened on Feb 6, 2024

• Replace manual number parsing

  DKFZ-ODCF/sophia#19 · Filter by author vinjana opened on Feb 5, 2024

• Concept for "compressed master ref" subset.

  DKFZ-ODCF/sophia#17 · Filter by author vinjana opened on Jan 30, 2024

• Make all constructors side-effect-free

  DKFZ-ODCF/sophia#16 · Filter by author vinjana opened on Jan 30, 2024

• Magic numbers returned by SvEvent::filterMatch/Unknown?

  DKFZ-ODCF/sophia#15 · Filter by author vinjana opened on Jan 23, 2024

• Replace "read-type"-magic numbers (e.g. Alignment::getReadType()) by something useful

  DKFZ-ODCF/sophia#14 · Filter by author vinjana opened on Jan 23, 2024

• What's going on in src/SamSegmentMapper.cpp:226

  DKFZ-ODCF/sophia#13 · Filter by author vinjana opened on Jan 23, 2024
  1

  

• Centralize number parsing code

  DKFZ-ODCF/sophia#12 · Filter by author vinjana opened on Jan 23, 2024

• Avoid global static configuration

  DKFZ-ODCF/sophia#11 · Filter by author vinjana opened on Jan 23, 2024

• ChrIndex and CompressedMrefIndex not type-checked

  DKFZ-ODCF/sophia#10 · Filter by author vinjana opened on Jan 23, 2024
  2

• Remove [[gnu::unused]] parameters

  DKFZ-ODCF/sophia#8 · Filter by author vinjana opened on Jan 18, 2024

• Failure for chromosomes with "chr" prefix

  DKFZ-ODCF/sophia#4 · Filter by author vinjana opened on Nov 27, 2023
  3

  

• Code style

  DKFZ-ODCF/sophia#2 · Filter by author vinjana opened on Apr 3, 2023