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align_tilt_series: make the AreTomo backend import optional - #1358

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FlyinTeller wants to merge 1 commit into
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FlyinTeller:fix/aretomo-optional-import
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FlyinTeller wants to merge 1 commit into
3dem:masterfrom
FlyinTeller:fix/aretomo-optional-import

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@FlyinTeller

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It's eagerly imported at module load, so the whole command fails to start without AreTomo installed - even for IMOD-only use (fiducials/patch tracking, unaffected by AreTomo's availability). AreTomo itself is a closed-source binary tied to old CUDA versions, so it's reasonable for it to be genuinely optional.

It's eagerly imported at module load, so the whole command fails to start
without AreTomo installed - even for IMOD-only use (fiducials/patch
tracking, unaffected by AreTomo's availability). AreTomo itself is a
closed-source binary tied to old CUDA versions, so it's reasonable for it
to be genuinely optional.
@scheres

scheres commented Sep 30, 2026

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Isn't this an issue with how you have installed AreTomo, rather than with the relion code?

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