diff --git a/README.md b/README.md index c59c02e..45e744f 100644 --- a/README.md +++ b/README.md @@ -125,10 +125,6 @@ Please refer to our [readthedocs](https://cytopus.readthedocs.io) for more detai Learn how to explore the Knowledge Base and retrieve a dicitionary which can be used for [Spectra](https://github.com/dpeerlab/spectra): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/wallet-maker/cytopus/blob/main/notebooks/KnowledgeBase_queries_colaboratory.ipynb) -### Interactive tutorial for Generating a cytopus Knowledge Base object: -Learn how to create a Knowledge Base object from gene sets annotations and cell type hierarchies stored in .csv files: -[here](https://github.com/wallet-maker/cytopus/blob/main/notebooks/KnowledgeBase_construct.ipynb) - ### Interactive utils tutorial - Labeling Factor Analysis Outputs (Spectra): Learn how to label marker genes from factor analysis, determine factor cell type specificity and export the Knowledge Base content as .gmt files for other applications: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/wallet-maker/cytopus/blob/main/notebooks/Cytopus_utils_tutorial.ipynb)